{
    "type": "genome",
    "identifier": "GCF_002157225.2",
    "organism": "Agarilytica rhodophyticola",
    "title": "Agarilytica rhodophyticola",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Shandong University at Weihai",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002157225.2",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06187574",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1737490",
        "species_taxid": "1737490",
        "organism_name": "Agarilytica rhodophyticola",
        "infraspecific_name": "strain=017",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/06/13",
        "asm_name": "ASM215722v2",
        "asm_submitter": "Shandong University at Weihai",
        "gbrs_paired_asm": "GCA_002157225.2",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/157/225/GCF_002157225.2_ASM215722v2",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "7113812",
        "genome_size_ungapped": "7113812",
        "gc_percent": "41.000000",
        "replicon_count": "4",
        "scaffold_count": "4",
        "contig_count": "4",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002157225.2-RS_2024_05_03",
        "annotation_date": "2024-05-03",
        "total_gene_count": "5856",
        "protein_coding_gene_count": "5749",
        "non_coding_gene_count": "87",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-06-13",
    "dateModified": "2017-06-13",
    "datePublished": "2017-06-13",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Agarilytica rhodophyticola"
        ],
        "sample_taxid": [
            "1737490"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "China: Hainan Province"
        ],
        "sample_host_location_id": [],
        "data_size": "2.022 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "7113812",
        "Number of Sequences": "4",
        "Longest Sequences (bp)": "6878829",
        "N50 (bp)": "6878829",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "40.9",
        "Number of CDSs": "5851",
        "Average Protein Length": "338.2",
        "Coding Ratio (%)": "83.4",
        "Number of rRNAs": "9",
        "Number of tRNAs": "72",
        "Number of CRISPRs": "4"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Agarilytica rhodophyticola",
                "strain": "strain=017",
                "accession": "GCA_002157225.2",
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                "species_taxid": 1737490,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 2366,
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                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Teredinibacter franksiae",
                "strain": "strain=Bsc2",
                "accession": "GCA_014218805.1",
                "taxid": 2761453,
                "species_taxid": 2761453,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8507,
                "matched_fragments": 52,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Saccharophagus degradans",
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                "accession": "GCA_000013665.1",
                "taxid": 86304,
                "species_taxid": 86304,
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                "matched_fragments": 62,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Teredinibacter haidensis",
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                "accession": "GCA_014211975.1",
                "taxid": 2731755,
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                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 59,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Teredinibacter waterburyi",
                "strain": "strain=Bs02",
                "accession": "GCA_001922985.1",
                "taxid": 1500538,
                "species_taxid": 1500538,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3216,
                "matched_fragments": 51,
                "total_fragments": 2368,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
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            {
                "accession": "GCF_002157225.2",
                "gtdb_species": "s__Agarilytica rhodophyticola",
                "ani": 100.0,
                "matched_fragments": 2365,
                "total_fragments": 2368,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Agarilytica",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000013665.1",
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                "matched_fragments": 62,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Saccharophagus",
                "ani_circumscription_radius": 95.0,
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                "mean_intra_species_af": "0.89",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_014211975.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Teredinibacter",
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                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_902141825.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Thalassocella",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002746115.1",
                "gtdb_species": "s__GCA-2746115 sp002746115",
                "ani": 76.5311,
                "matched_fragments": 55,
                "total_fragments": 2368,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__GCA-2746115",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001922985.1",
                "gtdb_species": "s__Teredinibacter waterburyi",
                "ani": 76.2818,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Cellvibrionaceae;g__Teredinibacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
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        "growth_tmp": null,
        "optimum_tmp": null,
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        "coding_genes": 5757.0,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 70.0,
        "gram_stain": null,
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        "facultative_respiration": null,
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        "mesophilic_range_tmp": null,
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        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
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        "rhodophyticola"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}