{ "type": "genome", "identifier": "GCF_002157835.1", "organism": "Mycobacterium dioxanotrophicus", "title": "Mycobacterium dioxanotrophicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Rice University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002157835.1", "bioproject": "PRJNA224116", "biosample": "SAMN06134492", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "482462", "species_taxid": "482462", "organism_name": "Mycobacterium dioxanotrophicus", "infraspecific_name": "strain=PH-06", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/25", "asm_name": "ASM215783v1", "asm_submitter": "Rice University", "gbrs_paired_asm": "GCA_002157835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/157/835/GCF_002157835.1_ASM215783v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8080416", "genome_size_ungapped": "8080416", "gc_percent": "66.500000", "replicon_count": "5", "scaffold_count": "5", "contig_count": "5", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002157835.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "7880", "protein_coding_gene_count": "7528", "non_coding_gene_count": "95", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-25", "dateModified": "2017-05-25", "datePublished": "2017-05-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium dioxanotrophicus" ], "sample_taxid": [ "482462" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "2.220 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8080416", "Number of Sequences": "5", "Longest Sequences (bp)": "7595921", "N50 (bp)": "7595921", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.5", "Number of CDSs": "7908", "Average Protein Length": "310.1", "Coding Ratio (%)": "91.0", "Number of rRNAs": "9", "Number of tRNAs": "91", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium dioxanotrophicus", "strain": "strain=PH-06", "accession": "GCA_002157835.1", "taxid": 482462, "species_taxid": 482462, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2688, "total_fragments": 2690, "ani_threshold": 95, 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"Mycolicibacterium boenickei", "strain": "strain=JCM 15653", "accession": "GCA_010731295.1", "taxid": 146017, "species_taxid": 146017, "relation_to_type": "type", "validated": true, "ani": 82.1551, "matched_fragments": 1339, "total_fragments": 2690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium houstonense", "strain": "strain=type strain: ATCC 49403", "accession": "GCA_900078665.2", "taxid": 146021, "species_taxid": 146021, "relation_to_type": "type", "validated": true, "ani": 82.125, "matched_fragments": 1279, "total_fragments": 2690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium neworleansense", "strain": "strain=type strain: ATCC 49404", "accession": "GCA_001245615.1", "taxid": 146018, "species_taxid": 146018, "relation_to_type": "type", "validated": true, "ani": 82.0867, "matched_fragments": 1312, "total_fragments": 2690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium septicum", "strain": "strain=ATCC 700731", "accession": "GCA_012396425.1", "taxid": 98668, "species_taxid": 98668, "relation_to_type": "type", "validated": true, "ani": 82.0855, "matched_fragments": 1347, "total_fragments": 2690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Mycobacterium] fortunisiensis", "strain": "strain=TNTM28", "accession": "GCA_019050325.1", "taxid": 2600579, "species_taxid": 2600579, "relation_to_type": "type", "validated": true, "ani": 82.0006, "matched_fragments": 1164, "total_fragments": 2690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. fortuitum", "strain": "strain=DSM 46621", "accession": "GCA_000295855.1", "taxid": 144549, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 81.8444, "matched_fragments": 1226, "total_fragments": 2690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium 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"Mycolicibacterium llatzerense", "strain": "strain=MG13", "accession": "GCA_025331195.1", "taxid": 280871, "species_taxid": 280871, "relation_to_type": "type", "validated": true, "ani": 80.3938, "matched_fragments": 923, "total_fragments": 2690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Candidatus Mycolicibacterium alkanivorans", "strain": "", "accession": "GCA_022760805.1", "taxid": 2954114, "species_taxid": 2954114, "relation_to_type": "type", "validated": true, "ani": 80.1503, "matched_fragments": 627, "total_fragments": 2690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium vinylchloridicum", "strain": "strain=CECT 8761", "accession": "GCA_013404075.1", "taxid": 2736928, "species_taxid": 2736928, "relation_to_type": "type", "validated": true, "ani": 79.6231, "matched_fragments": 876, "total_fragments": 2690, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": 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