{
    "type": "genome",
    "identifier": "GCF_002157875.1",
    "organism": "Oceanisphaera avium",
    "title": "Oceanisphaera avium",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Kyung Hee University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002157875.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07139035",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1903694",
        "species_taxid": "1903694",
        "organism_name": "Oceanisphaera avium",
        "infraspecific_name": "strain=AMac2203",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/05/25",
        "asm_name": "ASM215787v1",
        "asm_submitter": "Kyung Hee University",
        "gbrs_paired_asm": "GCA_002157875.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/157/875/GCF_002157875.1_ASM215787v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2902896",
        "genome_size_ungapped": "2902896",
        "gc_percent": "47.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002157875.1-RS_2024_12_13",
        "annotation_date": "2024-12-13",
        "total_gene_count": "2708",
        "protein_coding_gene_count": "2552",
        "non_coding_gene_count": "117",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-05-25",
    "dateModified": "2017-05-25",
    "datePublished": "2017-05-25",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Oceanisphaera avium"
        ],
        "sample_taxid": [
            "1903694"
        ],
        "sample_host_organism": [
            "cinereous vulture"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea"
        ],
        "sample_host_location_id": [],
        "data_size": "0.823 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2902896",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "2902896",
        "N50 (bp)": "2902896",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "47.1",
        "Number of CDSs": "2630",
        "Average Protein Length": "316.3",
        "Coding Ratio (%)": "86.0",
        "Number of rRNAs": "25",
        "Number of tRNAs": "88",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Oceanisphaera avium",
                "strain": "strain=AMac2203",
                "accession": "GCA_002157875.1",
                "taxid": 1903694,
                "species_taxid": 1903694,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 967,
                "total_fragments": 967,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Oceanisphaera profunda",
                "strain": "strain=SM1222",
                "accession": "GCA_002157895.1",
                "taxid": 1416627,
                "species_taxid": 1416627,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.6375,
                "matched_fragments": 561,
                "total_fragments": 967,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanisphaera pacifica",
                "strain": "strain=DM8",
                "accession": "GCA_017498065.1",
                "taxid": 2818389,
                "species_taxid": 2818389,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1058,
                "matched_fragments": 386,
                "total_fragments": 967,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanisphaera marina",
                "strain": "strain=CGMCC 1.15923",
                "accession": "GCA_014643915.1",
                "taxid": 2017550,
                "species_taxid": 2017550,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.7437,
                "matched_fragments": 305,
                "total_fragments": 967,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Oceanisphaera arctica",
                "strain": "strain=KCTC 23013",
                "accession": "GCA_014652055.1",
                "taxid": 641510,
                "species_taxid": 641510,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.4429,
                "matched_fragments": 183,
                "total_fragments": 967,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Agarivorans litoreus",
                "strain": "strain=NBRC 110444",
                "accession": "GCA_019649015.1",
                "taxid": 1510455,
                "species_taxid": 1510455,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.3763,
                "matched_fragments": 55,
                "total_fragments": 967,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zobellella endophytica",
                "strain": "strain=59N8",
                "accession": "GCA_003012775.1",
                "taxid": 2116700,
                "species_taxid": 2116700,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9496,
                "matched_fragments": 114,
                "total_fragments": 967,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Zobellella denitrificans",
                "strain": "strain=ZD1",
                "accession": "GCA_002237365.1",
                "taxid": 347534,
                "species_taxid": 347534,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.6067,
                "matched_fragments": 113,
                "total_fragments": 967,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002157875.1",
                "gtdb_species": "s__Oceanisphaera avium",
                "ani": 100.0,
                "matched_fragments": 967,
                "total_fragments": 967,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002157895.1",
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                "matched_fragments": 560,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_018883865.1",
                "gtdb_species": "s__Oceanisphaera merdipullorum",
                "ani": 79.9128,
                "matched_fragments": 449,
                "total_fragments": 967,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_017498065.1",
                "gtdb_species": "s__Oceanisphaera sp017498065",
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                "total_fragments": 967,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCA_012518835.1",
                "gtdb_species": "s__Oceanisphaera sp012518835",
                "ani": 78.1886,
                "matched_fragments": 284,
                "total_fragments": 967,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Aeromonadaceae;g__Oceanisphaera",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
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        "cell_length": -0.082,
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        "gc_content": 53.683,
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        "psychrophilic_range_tmp": 1.0,
        "bacillus_cell_shape": 0.5,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
        "Oceanisphaera",
        "avium"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}