{ "type": "genome", "identifier": "GCF_002157895.1", "organism": "Oceanisphaera profunda", "title": "Oceanisphaera profunda", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002157895.1", "bioproject": "PRJNA224116", "biosample": "SAMN07139042", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1416627", "species_taxid": "1416627", "organism_name": "Oceanisphaera profunda", "infraspecific_name": "strain=SM1222", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/25", "asm_name": "ASM215789v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_002157895.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/157/895/GCF_002157895.1_ASM215789v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3508860", "genome_size_ungapped": "3508860", "gc_percent": "50.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002157895.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3104", "protein_coding_gene_count": "2935", "non_coding_gene_count": "120", "pubmed_id": "24425742" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-25", "dateModified": "2017-05-25", "datePublished": "2017-05-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Oceanisphaera profunda" ], "sample_taxid": [ "1416627" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China" ], "sample_host_location_id": [], "data_size": "0.995 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3508860", "Number of Sequences": "1", "Longest Sequences (bp)": "3508860", "N50 (bp)": "3508860", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.8", "Number of CDSs": "3040", "Average Protein Length": "317.7", "Coding Ratio (%)": "82.6", "Number of rRNAs": "25", "Number of tRNAs": "91", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanisphaera profunda", "strain": "strain=SM1222", "accession": "GCA_002157895.1", "taxid": 1416627, "species_taxid": 1416627, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1169, "total_fragments": 1169, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Oceanisphaera avium", "strain": "strain=AMac2203", "accession": "GCA_002157875.1", "taxid": 1903694, "species_taxid": 1903694, "relation_to_type": "type", "validated": true, "ani": 80.5569, "matched_fragments": 558, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanisphaera marina", "strain": "strain=CGMCC 1.15923", "accession": "GCA_014643915.1", "taxid": 2017550, "species_taxid": 2017550, "relation_to_type": "type", "validated": true, "ani": 79.6025, "matched_fragments": 567, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio stylophorae", "strain": "strain=CECT 7929", "accession": "GCA_921293875.1", "taxid": 659351, "species_taxid": 659351, "relation_to_type": "type", "validated": true, "ani": 79.5334, "matched_fragments": 54, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"GCA_014652055.1", "taxid": 641510, "species_taxid": 641510, "relation_to_type": "type", "validated": true, "ani": 78.5394, "matched_fragments": 379, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanisphaera litoralis", "strain": "strain=DSM 15406", "accession": "GCA_016907015.1", "taxid": 225144, "species_taxid": 225144, "relation_to_type": "type", "validated": true, "ani": 78.5064, "matched_fragments": 323, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanisphaera psychrotolerans", "strain": "strain=LAM-WHM-ZC", "accession": "GCA_001870485.1", "taxid": 1414654, "species_taxid": 1414654, "relation_to_type": "type", "validated": true, "ani": 78.0721, "matched_fragments": 315, "total_fragments": 1169, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oceanimonas baumannii", "strain": "strain=ATCC 700832", "accession": "GCA_002245495.1", "taxid": 129578, 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