{ "type": "genome", "identifier": "GCF_002163565.1", "organism": "Spiroplasma clarkii", "title": "Spiroplasma clarkii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Beltsville Agricultural Research Center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002163565.1", "bioproject": "PRJNA224116", "biosample": "SAMN04285339", "wgs_master": "na", "refseq_category": "na", "taxid": "2139", "species_taxid": "2139", "organism_name": "Spiroplasma clarkii", "infraspecific_name": "strain=CN-5", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/02", "asm_name": "ASM216356v1", "asm_submitter": "Beltsville Agricultural Research Center", "gbrs_paired_asm": "GCA_002163565.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/163/565/GCF_002163565.1_ASM216356v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1558445", "genome_size_ungapped": "1558445", "gc_percent": "29.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-26", "total_gene_count": "1914", "protein_coding_gene_count": "1826", "non_coding_gene_count": "38", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-02", "dateModified": "2017-06-02", "datePublished": "2017-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Spiroplasma clarkii" ], "sample_taxid": [ "2139" ], "sample_host_organism": [ "Cotinis nitida (green June beetle)" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "0.419 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 98.15, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1558445", "Number of Sequences": "1", "Longest Sequences (bp)": "1558445", "N50 (bp)": "1558445", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "29.6", "Number of CDSs": "2783", "Average Protein Length": "117.7", "Coding Ratio (%)": "63.1", "Number of rRNAs": "6", "Number of tRNAs": "29", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spiroplasma clarkii", "strain": "strain=CN-5", "accession": "GCA_002163565.1", "taxid": 2139, "species_taxid": 2139, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 519, "total_fragments": 519, 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002813555.1", "gtdb_species": "s__Spiroplasma_A floricola", "ani": 78.4733, "matched_fragments": 99, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmataceae;g__Spiroplasma_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010365805.1", "gtdb_species": "s__Spiroplasma_A sp010365805", "ani": 78.406, "matched_fragments": 88, "total_fragments": 519, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmataceae;g__Spiroplasma_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, 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