{ "type": "genome", "identifier": "GCF_002163585.1", "organism": "Tatumella citrea", "title": "Tatumella citrea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002163585.1", "bioproject": "PRJNA224116", "biosample": "SAMN04910067", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "53336", "species_taxid": "53336", "organism_name": "Tatumella citrea", "infraspecific_name": "strain=DSM 13699", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/02", "asm_name": "ASM216358v1", "asm_submitter": "Chinese Academy of Sciences", "gbrs_paired_asm": "GCA_002163585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/163/585/GCF_002163585.1_ASM216358v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4491252", "genome_size_ungapped": "4491252", "gc_percent": "49.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002163585.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4192", "protein_coding_gene_count": "4023", "non_coding_gene_count": "121", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-02", "dateModified": "2017-06-02", "datePublished": "2017-06-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Tatumella citrea" ], "sample_taxid": [ "53336" ], "sample_host_organism": [ "mandarin orange" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "1.273 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4491252", "Number of Sequences": "2", "Longest Sequences (bp)": "4487466", "N50 (bp)": "4487466", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.7", "Number of CDSs": "4085", "Average Protein Length": "316.5", "Coding Ratio (%)": "86.4", "Number of rRNAs": "22", "Number of tRNAs": "81", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tatumella citrea", "strain": "strain=DSM 13699", "accession": "GCA_002163585.1", "taxid": 53336, "species_taxid": 53336, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1493, "total_fragments": 1496, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Tatumella morbirosei", "strain": "strain=LMG 23360", "accession": "GCA_000757425.2", "taxid": 642227, "species_taxid": 642227, "relation_to_type": "type", "validated": true, "ani": 87.5176, "matched_fragments": 1219, "total_fragments": 1496, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tatumella ptyseos", "strain": "strain=NCTC11468", "accession": "GCA_900478715.1", "taxid": 82987, "species_taxid": 82987, "relation_to_type": "type", "validated": true, "ani": 80.5761, "matched_fragments": 551, "total_fragments": 1496, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tatumella ptyseos", "strain": "strain=ATCC 33301", "accession": "GCA_000735525.1", "taxid": 82987, "species_taxid": 82987, "relation_to_type": "type", "validated": true, "ani": 80.3154, "matched_fragments": 537, "total_fragments": 1496, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tatumella ptyseos", "strain": "strain=ATCC 33301", "accession": "GCA_000439895.1", "taxid": 82987, "species_taxid": 82987, "relation_to_type": "type", "validated": true, "ani": 80.2587, "matched_fragments": 550, "total_fragments": 1496, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tatumella saanichensis", "strain": "strain=NML 06-3099", "accession": "GCA_000439375.1", "taxid": 480813, "species_taxid": 480813, "relation_to_type": "type", "validated": true, "ani": 79.9902, "matched_fragments": 448, "total_fragments": 1496, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Leclercia pneumoniae", "strain": "strain=49125", "accession": "GCA_018987305.1", "taxid": 2815358, "species_taxid": 2815358, "relation_to_type": "type", "validated": true, "ani": 78.9982, "matched_fragments": 193, "total_fragments": 1496, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia aphidicola", "strain": "strain=X001", "accession": "GCA_024169515.1", "taxid": 68334, 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