{ "type": "genome", "identifier": "GCF_002165375.2", "organism": "Acinetobacter chinensis", "title": "Acinetobacter chinensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "West China Hospital, Sichuan University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002165375.2", "bioproject": "PRJNA224116", "biosample": "SAMN07138949", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2004650", "species_taxid": "2004650", "organism_name": "Acinetobacter chinensis", "infraspecific_name": "strain=WCHAc010005", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/09/12", "asm_name": "ASM216537v2", "asm_submitter": "West China Hospital, Sichuan University", "gbrs_paired_asm": "GCA_002165375.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/165/375/GCF_002165375.2_ASM216537v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3737289", "genome_size_ungapped": "3737289", "gc_percent": "42.500000", "replicon_count": "8", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002165375.2-RS_2024_11_26", "annotation_date": "2024-11-26", "total_gene_count": "3608", "protein_coding_gene_count": "3444", "non_coding_gene_count": "108", "pubmed_id": "30806982" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-09-12", "dateModified": "2018-09-12", "datePublished": "2018-09-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter chinensis" ], "sample_taxid": [ "2004650" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Sichuan, Chengdu" ], "sample_host_location_id": [], "data_size": "1.050 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3737289", "Number of Sequences": "8", "Longest Sequences (bp)": "3600635", "N50 (bp)": "3600635", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "42.4", "Number of CDSs": "3536", "Average Protein Length": "300.3", "Coding Ratio (%)": "85.3", "Number of rRNAs": "21", "Number of tRNAs": "83", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter chinensis", "strain": "strain=WCHAc010005", "accession": "GCA_002165375.2", "taxid": 2004650, "species_taxid": 2004650, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1240, "total_fragments": 1243, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Acinetobacter wuhouensis", "strain": "strain=WCHA60", "accession": "GCA_001696605.3", "taxid": 1879050, "species_taxid": 1879050, "relation_to_type": "type", "validated": true, "ani": 83.3547, "matched_fragments": 570, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter defluvii", "strain": "strain=WCHA30", "accession": "GCA_001704615.3", "taxid": 1871111, "species_taxid": 1871111, "relation_to_type": "type", "validated": true, "ani": 81.4011, "matched_fragments": 475, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter sichuanensis", "strain": "strain=WCHAc060041", "accession": "GCA_003024515.2", "taxid": 2136183, "species_taxid": 2136183, "relation_to_type": "type", "validated": true, "ani": 80.9, "matched_fragments": 462, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=ANC 4275", "accession": "GCA_001678755.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.487, "matched_fragments": 428, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gandensis", "strain": "strain=CCUG 68482", "accession": "GCA_008802205.1", "taxid": 1443941, "species_taxid": 1443941, "relation_to_type": "type", "validated": true, "ani": 80.3459, "matched_fragments": 418, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter variabilis", "strain": "strain=NIPH 2171", "accession": "GCA_000369625.1", "taxid": 70346, "species_taxid": 70346, "relation_to_type": "type", "validated": true, "ani": 80.2872, "matched_fragments": 465, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guillouiae", "strain": "strain=CIP 63.46", "accession": "GCA_000368145.1", "taxid": 106649, "species_taxid": 106649, "relation_to_type": "type", "validated": true, "ani": 80.2175, "matched_fragments": 466, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=CIP 110367", "accession": "GCA_000488255.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 80.1537, "matched_fragments": 481, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter rongchengensis", "strain": "strain=WCHAc060115", "accession": "GCA_003611475.1", "taxid": 2419601, "species_taxid": 2419601, "relation_to_type": "type", "validated": true, "ani": 80.1157, "matched_fragments": 454, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter piscicola", "strain": "strain=LW15", "accession": "GCA_002233755.1", "taxid": 2006115, "species_taxid": 2006115, "relation_to_type": "type", "validated": true, "ani": 80.079, "matched_fragments": 449, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter bouvetii", "strain": "strain=CIP 107468", "accession": "GCA_000368865.1", "taxid": 202951, "species_taxid": 202951, "relation_to_type": "type", "validated": true, "ani": 80.07, "matched_fragments": 444, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter kanungonis", "strain": "strain=PS-1", "accession": "GCA_009939195.1", "taxid": 2699469, "species_taxid": 2699469, "relation_to_type": "type", "validated": true, "ani": 80.042, "matched_fragments": 436, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter terrestris", "strain": "strain=ANC 4471", "accession": "GCA_004331155.1", "taxid": 2529843, "species_taxid": 2529843, "relation_to_type": "suspected-type", "validated": true, "ani": 80.0201, "matched_fragments": 481, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter indicus", "strain": "strain=DSM 25388", "accession": "GCA_000830155.1", "taxid": 756892, "species_taxid": 756892, "relation_to_type": "type", "validated": true, "ani": 79.8784, "matched_fragments": 459, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pragensis", "strain": "strain=ANC 4149", "accession": "GCA_001605895.1", "taxid": 1806892, "species_taxid": 1806892, "relation_to_type": "type", "validated": true, "ani": 79.8232, "matched_fragments": 451, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=KCTC 12415", "accession": "GCA_000747725.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 79.8117, "matched_fragments": 393, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter silvestris", "strain": "strain=ANC 4999", "accession": "GCA_002135235.1", "taxid": 1977882, "species_taxid": 1977882, "relation_to_type": "type", "validated": true, "ani": 79.7464, "matched_fragments": 376, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pecorum", "strain": "strain=Sa1BUA6", "accession": "GCA_014837015.1", "taxid": 2762215, "species_taxid": 2762215, "relation_to_type": "type", "validated": true, "ani": 79.5937, "matched_fragments": 446, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.4456, "matched_fragments": 321, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 79.4362, "matched_fragments": 306, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter albensis", "strain": "strain=ANC 4874", "accession": "GCA_900095025.1", "taxid": 1673609, "species_taxid": 1673609, "relation_to_type": "type", "validated": true, "ani": 79.4268, "matched_fragments": 386, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 79.3225, "matched_fragments": 319, "total_fragments": 1243, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002165375.2", "gtdb_species": "s__Acinetobacter chinensis", "ani": 100.0, "matched_fragments": 1239, "total_fragments": 1243, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.92", "min_intra_species_ani": "96.92", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_001696605.3", "gtdb_species": "s__Acinetobacter wuhouensis", "ani": 83.3514, "matched_fragments": 570, "total_fragments": 1243, "gtdb_taxonomy": 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