{ "type": "genome", "identifier": "GCF_002174125.1", "organism": "Acinetobacter populi", "title": "Acinetobacter populi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Public Health", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002174125.1", "bioproject": "PRJNA224116", "biosample": "SAMN06891249", "wgs_master": "NEXX00000000.1", "refseq_category": "reference genome", "taxid": "1582270", "species_taxid": "1582270", "organism_name": "Acinetobacter populi", "infraspecific_name": "strain=PBJ7", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/06", "asm_name": "ASM217412v1", "asm_submitter": "National Institute of Public Health", "gbrs_paired_asm": "GCA_002174125.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/174/125/GCF_002174125.1_ASM217412v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3686702", "genome_size_ungapped": "3686702", "gc_percent": "40.000000", "replicon_count": "0", "scaffold_count": "12", "contig_count": "12", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002174125.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3430", "protein_coding_gene_count": "3298", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-06", "dateModified": "2017-06-06", "datePublished": "2017-06-06", "_annotation": { "sample_count": 1, "sample_organism": [ "Acinetobacter populi" ], "sample_taxid": [ "1582270" ], "sample_host_organism": [ "Populus x canadensis" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Puyang" ], "sample_host_location_id": [], "data_size": "1.040 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3686702", "Number of Sequences": "12", "Longest Sequences (bp)": "1322962", "N50 (bp)": "646435", "Gap Ratio (%)": "0.000027", "GCcontent (%)": "40.2", "Number of CDSs": "3354", "Average Protein Length": "318.9", "Coding Ratio (%)": "87.0", "Number of rRNAs": "6", "Number of tRNAs": "59", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Acinetobacter populi", "strain": "strain=PBJ7", "accession": "GCA_002174125.1", "taxid": 1582270, "species_taxid": 1582270, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1224, 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"below_threshold" }, { "organism_name": "Acinetobacter wuhouensis", "strain": "strain=WCHA60", "accession": "GCA_001696605.3", "taxid": 1879050, "species_taxid": 1879050, "relation_to_type": "type", "validated": true, "ani": 78.2382, "matched_fragments": 212, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter defluvii", "strain": "strain=WCHA30", "accession": "GCA_001704615.3", "taxid": 1871111, "species_taxid": 1871111, "relation_to_type": "type", "validated": true, "ani": 78.1968, "matched_fragments": 211, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter venetianus", "strain": "strain=CIP 110063", "accession": "GCA_000368585.1", "taxid": 52133, "species_taxid": 52133, "relation_to_type": "type", "validated": true, "ani": 78.1514, "matched_fragments": 195, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter soli", "strain": "strain=KCTC 22184", "accession": "GCA_000760595.1", "taxid": 487316, "species_taxid": 487316, "relation_to_type": "type", "validated": true, "ani": 78.1234, "matched_fragments": 190, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=CIP 107464", "accession": "GCA_000368565.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 78.1216, "matched_fragments": 219, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter seifertii", "strain": "strain=NIPH 973", "accession": "GCA_000368065.1", "taxid": 1530123, "species_taxid": 1530123, "relation_to_type": "type", "validated": true, "ani": 78.097, "matched_fragments": 206, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter cumulans", "strain": "strain=WCHAc060092", "accession": "GCA_003024525.3", "taxid": 2136182, "species_taxid": 2136182, "relation_to_type": "type", "validated": true, "ani": 78.0898, "matched_fragments": 169, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter venetianus", "strain": "strain=RAG-1", "accession": "GCA_000271425.1", "taxid": 52133, "species_taxid": 52133, "relation_to_type": "type", "validated": true, "ani": 78.0547, "matched_fragments": 191, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter harbinensis", "strain": "strain=HITLi 7", "accession": "GCA_000816495.1", "taxid": 1353941, "species_taxid": 1353941, "relation_to_type": "type", "validated": true, "ani": 78.0045, "matched_fragments": 190, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter guerrae", "strain": "strain=AC 1271", "accession": "GCA_009372255.1", "taxid": 1843371, "species_taxid": 1843371, "relation_to_type": "type", "validated": true, "ani": 77.999, "matched_fragments": 253, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter variabilis", "strain": "strain=NIPH 2171", "accession": "GCA_000369625.1", "taxid": 70346, "species_taxid": 70346, "relation_to_type": "type", "validated": true, "ani": 77.9672, "matched_fragments": 204, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter nosocomialis", "strain": "strain=NIPH 2119", "accession": "GCA_000368085.1", "taxid": 106654, "species_taxid": 106654, "relation_to_type": "type", "validated": true, "ani": 77.9627, "matched_fragments": 199, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=ATCC 19606", "accession": "GCA_020911985.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 77.959, "matched_fragments": 203, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baylyi", "strain": "strain=CIP 107474", "accession": "GCA_000368685.1", "taxid": 202950, "species_taxid": 202950, "relation_to_type": "type", "validated": true, "ani": 77.9371, "matched_fragments": 242, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter baumannii", "strain": "strain=PartI-Abaumannii-RM8376", "accession": "GCA_022870045.1", "taxid": 470, "species_taxid": 470, "relation_to_type": "type", "validated": true, "ani": 77.9246, "matched_fragments": 205, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pittii", "strain": "strain=CIP70.29", "accession": "GCA_024390955.1", "taxid": 48296, "species_taxid": 48296, "relation_to_type": "type", "validated": true, "ani": 77.9212, "matched_fragments": 206, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter gerneri", "strain": "strain=MTCC 9824", "accession": "GCA_000430245.1", "taxid": 202952, "species_taxid": 202952, "relation_to_type": "type", "validated": true, "ani": 77.8979, "matched_fragments": 214, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter ihumii", "strain": "strain=Marseille-P8049", "accession": "GCA_900625095.1", "taxid": 2483802, "species_taxid": 2483802, "relation_to_type": "type", "validated": true, "ani": 77.8943, "matched_fragments": 277, "total_fragments": 1224, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Acinetobacter pragensis", "strain": "strain=ANC 4149", "accession": "GCA_001605895.1", "taxid": 1806892, "species_taxid": 1806892, "relation_to_type": "type", "validated": true, "ani": 77.8529, "matched_fragments": 156, "total_fragments": 1224, "ani_threshold": 95, 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91.6953, "matched_fragments": 954, "total_fragments": 1224, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008693185.1", "gtdb_species": "s__Acinetobacter qingfengensis", "ani": 79.3492, "matched_fragments": 395, "total_fragments": 1224, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Moraxellaceae;g__Acinetobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_008017315.1", "gtdb_species": "s__Acinetobacter sp008017315", "ani": 78.5394, 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