{ "type": "genome", "identifier": "GCF_002177135.1", "organism": "Natronolimnobius baerhuensis", "title": "Natronolimnobius baerhuensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002177135.1", "bioproject": "PRJNA224116", "biosample": "SAMN06445343", "wgs_master": "MWPH00000000.1", "refseq_category": "reference genome", "taxid": "253108", "species_taxid": "253108", "organism_name": "Natronolimnobius baerhuensis", "infraspecific_name": "strain=CGMCC 1.3597", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/08", "asm_name": "ASM217713v1", "asm_submitter": "Chinese Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_002177135.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/177/135/GCF_002177135.1_ASM217713v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "3914301", "genome_size_ungapped": "3914301", "gc_percent": "60.000000", "replicon_count": "0", "scaffold_count": "8", "contig_count": "8", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002177135.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3887", "protein_coding_gene_count": "3773", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-08", "dateModified": "2017-06-08", "datePublished": "2017-06-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Natronolimnobius baerhuensis" ], "sample_taxid": [ "253108" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Inner Mongolia Autonomous Region" ], "sample_host_location_id": [], "data_size": "1.093 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3914301", "Number of Sequences": "8", "Longest Sequences (bp)": "1302804", "N50 (bp)": "1261254", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.2", "Number of CDSs": "3783", "Average Protein Length": "296.4", "Coding Ratio (%)": "85.9", "Number of rRNAs": "4", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Natronolimnobius baerhuensis", "strain": "strain=CGMCC 1.3597", "accession": "GCA_002177135.1", "taxid": 253108, "species_taxid": 253108, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1302, "total_fragments": 1302, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Halopiger aswanensis", "strain": "strain=DSM 13151", "accession": "GCA_003610195.1", "taxid": 148449, "species_taxid": 148449, "relation_to_type": "type", "validated": true, "ani": 80.519, "matched_fragments": 740, "total_fragments": 1302, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopiger xanaduensis", "strain": "strain=SH-6", "accession": "GCA_000217715.1", "taxid": 387343, "species_taxid": 387343, "relation_to_type": "type", "validated": true, "ani": 80.5012, "matched_fragments": 719, "total_fragments": 1302, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena alkaliphila", "strain": "strain=KZCA68", "accession": "GCA_017352155.2", "taxid": 2816475, "species_taxid": 2816475, "relation_to_type": "type", "validated": true, "ani": 79.8991, "matched_fragments": 573, "total_fragments": 1302, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronorubrum aibiense", "strain": "strain=7-3", "accession": "GCA_009392895.1", "taxid": 348826, "species_taxid": 348826, "relation_to_type": "type", "validated": true, "ani": 79.7651, "matched_fragments": 566, "total_fragments": 1302, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena salina", "strain": "strain=JCM 13891", "accession": "GCA_000337495.1", "taxid": 504937, "species_taxid": 504937, "relation_to_type": "type", "validated": true, "ani": 79.6743, "matched_fragments": 616, "total_fragments": 1302, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena limicola", "strain": "strain=JCM 13563", "accession": "GCA_000337475.1", "taxid": 370323, "species_taxid": 370323, "relation_to_type": "type", "validated": true, "ani": 79.64, "matched_fragments": 498, "total_fragments": 1302, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema amylolyticum", "strain": "strain=LT61", "accession": "GCA_020515625.1", "taxid": 2878679, "species_taxid": 2878679, "relation_to_type": "type", "validated": true, "ani": 79.4837, "matched_fragments": 595, "total_fragments": 1302, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopiger salifodinae", "strain": "strain=CGMCC 1.12284", "accession": "GCA_900110455.1", "taxid": 1202768, "species_taxid": 1202768, "relation_to_type": "type", "validated": true, "ani": 79.4406, "matched_fragments": 551, "total_fragments": 1302, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopiger djelfimassiliensis", "strain": "strain=IIH2", "accession": "GCA_000455365.1", "taxid": 1293047, "species_taxid": 1293047, "relation_to_type": "type", "validated": true, "ani": 79.3317, "matched_fragments": 570, "total_fragments": 1302, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002177135.1", "gtdb_species": "s__Natronolimnobius baerhuensis", "ani": 100.0, "matched_fragments": 1302, "total_fragments": 1302, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronolimnobius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.89", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_011043775.1", "gtdb_species": "s__Natronolimnobius sp011043775", "ani": 87.2286, "matched_fragments": 1065, "total_fragments": 1302, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronolimnobius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000217715.1", "gtdb_species": "s__Halopiger xanaduensis", "ani": 80.5207, "matched_fragments": 716, "total_fragments": 1302, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Halopiger", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003610195.1", "gtdb_species": "s__Halopiger aswanensis", "ani": 80.5108, "matched_fragments": 741, "total_fragments": 1302, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Halopiger", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017352155.1", "gtdb_species": "s__Haloterrigena sp017352155", "ani": 79.973, "matched_fragments": 550, "total_fragments": 1302, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Haloterrigena", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013342135.1", "gtdb_species": "s__Haloterrigena sp013342135", "ani": 79.7544, "matched_fragments": 630, "total_fragments": 1302, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Haloterrigena", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.13", "min_intra_species_ani": "99.13", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000337495.1", "gtdb_species": "s__Haloterrigena salina", "ani": 79.6614, "matched_fragments": 617, "total_fragments": 1302, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Haloterrigena", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000337475.1", "gtdb_species": "s__Natrinema limicola", "ani": 79.6611, "matched_fragments": 496, "total_fragments": 1302, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002494345.1", "gtdb_species": "s__Natrinema ejinorense", "ani": 79.3855, "matched_fragments": 559, "total_fragments": 1302, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.42", "min_intra_species_ani": "95.42", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000455365.1", "gtdb_species": "s__Halopiger_B djelfimassiliensis", "ani": 79.3154, "matched_fragments": 572, "total_fragments": 1302, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Halopiger_B", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": 41.0, "optimum_ph": 9.25, "genome_size": 3887816.0, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": 0.0, "sporulation": null, "motility": 0.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Natronolimnobius", "baerhuensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }