{ "type": "genome", "identifier": "GCF_002197815.1", "organism": "Pseudomonas oleovorans subsp. oleovorans", "title": "Pseudomonas oleovorans subsp. oleovorans", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Goettingen Genomics Laboratory", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002197815.1", "bioproject": "PRJNA224116", "biosample": "SAMN07213127", "wgs_master": "NIUB00000000.1", "refseq_category": "na", "taxid": "1218129", "species_taxid": "301", "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "infraspecific_name": "strain=DSM 1045", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/19", "asm_name": "ASM219781v1", "asm_submitter": "Goettingen Genomics Laboratory", "gbrs_paired_asm": "GCA_002197815.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/197/815/GCF_002197815.1_ASM219781v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4852859", "genome_size_ungapped": "4852859", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "109", "contig_count": "109", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002197815.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4754", "protein_coding_gene_count": "4407", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-19", "dateModified": "2017-06-19", "datePublished": "2017-06-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas oleovorans subsp. oleovorans" ], "sample_taxid": [ "1218129" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not collected" ], "sample_host_location_id": [], "data_size": "1.357 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4852859", "Number of Sequences": "109", "Longest Sequences (bp)": "211992", "N50 (bp)": "104148", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.1", "Number of CDSs": "4687", "Average Protein Length": "298.7", "Coding Ratio (%)": "86.5", "Number of rRNAs": "3", "Number of tRNAs": "62", "Number of CRISPRs": "5" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "strain": "strain=DSM 1045", "accession": "GCA_002197815.1", "taxid": 1218129, 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true, "ani": 93.6616, "matched_fragments": 1177, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sihuiensis", "strain": "strain=KCTC 32246", "accession": "GCA_900106015.1", "taxid": 1274359, "species_taxid": 1274359, "relation_to_type": "type", "validated": true, "ani": 93.6459, "matched_fragments": 1221, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=DSM 26169", "accession": "GCA_002741095.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 92.5741, "matched_fragments": 1197, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas toyotomiensis", "strain": "strain=JCM 15604", "accession": "GCA_900115695.1", "taxid": 554344, "species_taxid": 554344, "relation_to_type": "type", "validated": true, "ani": 92.5001, "matched_fragments": 1205, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sediminis", "strain": "strain=PI11", "accession": "GCA_002741105.1", "taxid": 1691904, "species_taxid": 1691904, "relation_to_type": "type", "validated": true, "ani": 91.2232, "matched_fragments": 1165, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaliphila", "strain": "strain=JCM 10630", "accession": "GCA_900101755.1", "taxid": 101564, "species_taxid": 101564, "relation_to_type": "type", "validated": true, "ani": 90.8044, "matched_fragments": 1184, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas alcaliphila", "strain": "strain=NBRC 102411", "accession": "GCA_002091495.1", "taxid": 101564, "species_taxid": 101564, "relation_to_type": "type", "validated": true, "ani": 90.7754, "matched_fragments": 1173, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 89.3035, "matched_fragments": 1179, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas yangonensis", "strain": "strain=MY50", "accession": "GCA_009932725.1", "taxid": 2579922, "species_taxid": 2579922, "relation_to_type": "type", "validated": true, "ani": 88.8247, "matched_fragments": 1129, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas hydrolytica", "strain": "strain=DSWY01", "accession": "GCA_021495345.2", "taxid": 2493633, "species_taxid": 2493633, "relation_to_type": "type", "validated": true, "ani": 88.4169, "matched_fragments": 1139, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 83.4599, "matched_fragments": 900, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas insulae", "strain": "strain=UL073", "accession": "GCA_016901015.1", "taxid": 2809017, "species_taxid": 2809017, "relation_to_type": "type", "validated": true, "ani": 82.168, "matched_fragments": 815, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas azotifigens", "strain": "strain=DSM 17556", "accession": "GCA_000425625.1", "taxid": 291995, "species_taxid": 291995, "relation_to_type": "type", "validated": true, "ani": 81.4458, "matched_fragments": 740, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=DSM 50238", "accession": "GCA_024448505.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "type", "validated": true, "ani": 81.3082, "matched_fragments": 708, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=FDAARGOS_876", "accession": "GCA_016028635.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "suspected-type", "validated": true, "ani": 81.2885, "matched_fragments": 729, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stutzerimonas degradans", "strain": "strain=DSM 50238", "accession": "GCA_002891015.1", "taxid": 2968968, "species_taxid": 2968968, "relation_to_type": "type", "validated": true, "ani": 81.2803, "matched_fragments": 718, "total_fragments": 1567, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sichuanensis", "strain": "strain=WCHPs060039", "accession": 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