{ "type": "genome", "identifier": "GCF_002197845.1", "organism": "Fimbriiglobus ruber", "title": "Fimbriiglobus ruber", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Bioengineering, Research Center of Biotechnology of RAS", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002197845.1", "bioproject": "PRJNA224116", "biosample": "SAMN07187746", "wgs_master": "NIDE00000000.1", "refseq_category": "reference genome", "taxid": "1908690", "species_taxid": "1908690", "organism_name": "Fimbriiglobus ruber", "infraspecific_name": "strain=SP5", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/19", "asm_name": "ASM219784v1", "asm_submitter": "Institute of Bioengineering, Research Center of Biotechnology of RAS", "gbrs_paired_asm": "GCA_002197845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/197/845/GCF_002197845.1_ASM219784v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "12363577", "genome_size_ungapped": "12363577", "gc_percent": "64.000000", "replicon_count": "0", "scaffold_count": "20", "contig_count": "20", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002197845.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "10241", "protein_coding_gene_count": "9963", "non_coding_gene_count": "103", "pubmed_id": "29374042" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-19", "dateModified": "2017-06-19", "datePublished": "2017-06-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Fimbriiglobus ruber" ], "sample_taxid": [ "1908690" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Russia: peat bog Obukhovskoye, Yaroslavl region" ], "sample_host_location_id": [], "data_size": "3.423 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "12363577", "Number of Sequences": "20", "Longest Sequences (bp)": "1680348", "N50 (bp)": "1426550", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.2", "Number of CDSs": "10371", "Average Protein Length": "333.3", "Coding Ratio (%)": "83.9", "Number of rRNAs": "6", "Number of tRNAs": "99", "Number of CRISPRs": "19" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Fimbriiglobus ruber", "strain": "strain=SP5", "accession": "GCA_002197845.1", "taxid": 1908690, "species_taxid": 1908690, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 4097, "total_fragments": 4108, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Limnoglobus roseus", "strain": "strain=PX52", "accession": "GCA_008254045.1", "taxid": 2598579, "species_taxid": 2598579, "relation_to_type": "type", "validated": true, "ani": 76.9636, "matched_fragments": 755, "total_fragments": 4108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Urbifossiella limnaea", "strain": "strain=ETA_A1", "accession": "GCA_007747215.1", "taxid": 2528023, "species_taxid": 2528023, "relation_to_type": "type", "validated": true, "ani": 76.7741, "matched_fragments": 796, "total_fragments": 4108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmata obscuriglobus", "strain": "strain=DSM 5831", "accession": "GCA_008065095.1", "taxid": 114, "species_taxid": 114, "relation_to_type": "type", "validated": true, "ani": 76.6111, "matched_fragments": 651, "total_fragments": 4108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmata obscuriglobus", "strain": "strain=UQM 2246", "accession": "GCA_000171775.1", "taxid": 114, "species_taxid": 114, "relation_to_type": "type", "validated": true, "ani": 76.5921, "matched_fragments": 612, "total_fragments": 4108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmata obscuriglobus", "strain": "strain=DSM 5831", "accession": "GCA_003149495.1", "taxid": 114, "species_taxid": 114, "relation_to_type": "type", "validated": true, "ani": 76.5707, "matched_fragments": 651, "total_fragments": 4108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gemmata obscuriglobus", "strain": "", "accession": "GCA_901538385.1", "taxid": 114, "species_taxid": 114, "relation_to_type": "type", "validated": true, "ani": 76.5533, "matched_fragments": 658, "total_fragments": 4108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferax prahovense", "strain": "strain=DSM 18310", "accession": "GCA_000336815.1", "taxid": 381852, "species_taxid": 381852, "relation_to_type": "type", "validated": true, "ani": 74.682, "matched_fragments": 93, "total_fragments": 4108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferax gibbonsii", "strain": "strain=ATCC 33959", "accession": "GCA_000336775.1", "taxid": 35746, "species_taxid": 35746, "relation_to_type": "type", "validated": true, "ani": 74.6389, "matched_fragments": 122, "total_fragments": 4108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomicroarcula limicola", "strain": "strain=YGHS32", "accession": "GCA_010119205.1", "taxid": 1429915, "species_taxid": 1429915, "relation_to_type": "type", "validated": true, "ani": 74.6037, "matched_fragments": 84, "total_fragments": 4108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferax volcanii", "strain": "strain=DS2", "accession": "GCA_000337315.1", "taxid": 2246, "species_taxid": 2246, "relation_to_type": "type", "validated": true, "ani": 74.5654, "matched_fragments": 101, "total_fragments": 4108, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloferax volcanii", "strain": "strain=DS2", "accession": "GCA_000025685.1", "taxid": 2246, "species_taxid": 2246, "relation_to_type": "type", "validated": true, "ani": 74.5644, "matched_fragments": 102, "total_fragments": 4108, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.67, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002197845.1", "gtdb_species": "s__Fimbriiglobus ruber", "ani": 100.0, "matched_fragments": 4097, "total_fragments": 4108, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Fimbriiglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_013128195.2", "gtdb_species": "s__Gemmata tundricola", "ani": 77.0308, "matched_fragments": 748, "total_fragments": 4108, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008254045.1", "gtdb_species": "s__Limnoglobus roseus", "ani": 76.9866, "matched_fragments": 750, "total_fragments": 4108, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Limnoglobus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_901538445.1", "gtdb_species": "s__Gemmata sp901538445", "ani": 76.9634, "matched_fragments": 795, "total_fragments": 4108, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_013822345.1", "gtdb_species": "s__Gemmata sp013822345", "ani": 76.827, "matched_fragments": 769, "total_fragments": 4108, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007747215.1", "gtdb_species": "s__Urbifossiella limnaea", "ani": 76.8048, "matched_fragments": 790, "total_fragments": 4108, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Urbifossiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_017308215.1", "gtdb_species": "s__Urbifossiella sp017308215", "ani": 76.7949, "matched_fragments": 805, "total_fragments": 4108, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Urbifossiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_016872595.1", "gtdb_species": "s__Gemmata sp016872595", "ani": 76.6616, "matched_fragments": 524, "total_fragments": 4108, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_008065095.1", "gtdb_species": "s__Gemmata obscuriglobus", "ani": 76.622, "matched_fragments": 644, "total_fragments": 4108, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.95", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_901538265.1", "gtdb_species": "s__Gemmata massiliana_A", "ani": 76.6018, "matched_fragments": 586, "total_fragments": 4108, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_000531095.1", "gtdb_species": "s__Gemmata massiliana", "ani": 76.5567, "matched_fragments": 551, "total_fragments": 4108, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.81", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_005773755.1", "gtdb_species": "s__Gemmata sp005773755", "ani": 76.345, "matched_fragments": 352, "total_fragments": 4108, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_005772955.1", "gtdb_species": "s__Gemmata sp005772955", "ani": 76.1247, "matched_fragments": 328, "total_fragments": 4108, "gtdb_taxonomy": "d__Bacteria;p__Planctomycetota;c__Planctomycetia;o__Gemmatales;f__Gemmataceae;g__Gemmata", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.91", "min_intra_species_ani": "99.90", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.93", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCA_011046615.1", "gtdb_species": "s__DSPQ01 sp011046615", "ani": 74.6508, "matched_fragments": 75, "total_fragments": 4108, "gtdb_taxonomy": "d__Bacteria;p__Chloroflexota;c__Anaerolineae;o__Anaerolineales;f__E44-bin32;g__DSPQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Fimbriiglobus", "ruber" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }