{ "type": "genome", "identifier": "GCF_002201235.1", "organism": "Polaribacter tangerinus", "title": "Polaribacter tangerinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong Uniwersity at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002201235.1", "bioproject": "PRJNA224116", "biosample": "SAMN07171769", "wgs_master": "NIDL00000000.1", "refseq_category": "na", "taxid": "1920034", "species_taxid": "1920034", "organism_name": "Polaribacter tangerinus", "infraspecific_name": "strain=WS2-14", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/20", "asm_name": "ASM220123v1", "asm_submitter": "Shandong Uniwersity at Weihai", "gbrs_paired_asm": "GCA_002201235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/201/235/GCF_002201235.1_ASM220123v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2673863", "genome_size_ungapped": "2673863", "gc_percent": "31.000000", "replicon_count": "0", "scaffold_count": "19", "contig_count": "19", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002201235.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "2366", "protein_coding_gene_count": "2313", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-20", "dateModified": "2017-06-20", "datePublished": "2017-06-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Polaribacter tangerinus" ], "sample_taxid": [ "1920034" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Rongcheng" ], "sample_host_location_id": [], "data_size": "0.737 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2673863", "Number of Sequences": "19", "Longest Sequences (bp)": "807511", "N50 (bp)": "675327", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.2", "Number of CDSs": "2311", "Average Protein Length": "350.1", "Coding Ratio (%)": "90.8", "Number of rRNAs": "2", "Number of tRNAs": "36", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polaribacter tangerinus", "strain": "strain=WS2-14", "accession": "GCA_002201235.1", "taxid": 1920034, "species_taxid": 1920034, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 883, "total_fragments": 883, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=KCTC 52418", "accession": "GCA_014784055.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 79.4591, "matched_fragments": 471, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter haliotis", "strain": "strain=RA4-7", "accession": "GCA_002201315.1", "taxid": 1888915, "species_taxid": 1888915, "relation_to_type": "type", "validated": true, "ani": 79.4133, "matched_fragments": 464, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter pectinis", "strain": "strain=L12M9", "accession": "GCA_014352875.1", "taxid": 2738844, "species_taxid": 2738844, "relation_to_type": "type", "validated": true, "ani": 79.3787, "matched_fragments": 462, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter aestuariivivens", "strain": "strain=DBTF-3", "accession": "GCA_005885675.1", "taxid": 2304626, "species_taxid": 2304626, "relation_to_type": "type", "validated": true, "ani": 79.3334, "matched_fragments": 502, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter cellanae", "strain": "strain=SM13", "accession": "GCA_017569185.1", "taxid": 2818493, "species_taxid": 2818493, "relation_to_type": "type", "validated": true, "ani": 79.2391, "matched_fragments": 459, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter batillariae", "strain": "strain=G4M1", "accession": "GCA_017498485.1", "taxid": 2808900, "species_taxid": 2808900, "relation_to_type": "type", "validated": true, "ani": 79.1947, "matched_fragments": 447, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter butkevichii", "strain": "strain=KCTC 12100", "accession": "GCA_002954605.1", "taxid": 218490, "species_taxid": 218490, "relation_to_type": "type", "validated": true, "ani": 78.9954, "matched_fragments": 440, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 78.9525, "matched_fragments": 427, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 78.8364, "matched_fragments": 394, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=KCTC 12392", "accession": "GCA_024362345.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 78.6844, "matched_fragments": 380, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=DSW-5", "accession": "GCA_001280865.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 78.6744, "matched_fragments": 384, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter dokdonensis", "strain": "strain=DSW-5", "accession": "GCA_900106865.1", "taxid": 326329, "species_taxid": 326329, "relation_to_type": "type", "validated": true, "ani": 78.6527, "matched_fragments": 381, "total_fragments": 883, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002201235.1", "gtdb_species": "s__Polaribacter tangerinus", "ani": 100.0, "matched_fragments": 883, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002005425.1", "gtdb_species": "s__Polaribacter sp002005425", "ani": 79.8498, "matched_fragments": 479, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.81", "min_intra_species_ani": "96.81", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002831685.1", "gtdb_species": "s__Polaribacter sp002831685", "ani": 79.4554, "matched_fragments": 470, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014784055.1", "gtdb_species": "s__Polaribacter haliotis", "ani": 79.4486, "matched_fragments": 472, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014352875.1", "gtdb_species": "s__Polaribacter sp014352875", "ani": 79.3662, "matched_fragments": 464, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_005885675.1", "gtdb_species": "s__Polaribacter aestuariivivens", "ani": 79.343, "matched_fragments": 501, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017569185.1", "gtdb_species": "s__Polaribacter sp017569185", "ani": 79.2642, "matched_fragments": 458, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_017498485.1", "gtdb_species": "s__Polaribacter sp017498485", "ani": 79.1943, "matched_fragments": 446, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000766795.1", "gtdb_species": "s__Polaribacter sp000766795", "ani": 79.0973, "matched_fragments": 455, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002954605.1", "gtdb_species": "s__Polaribacter butkevichii", "ani": 79.0001, "matched_fragments": 441, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019263805.1", "gtdb_species": "s__Polaribacter sp011379025", "ani": 78.9776, "matched_fragments": 425, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.52", "min_intra_species_ani": "98.52", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_001761365.1", "gtdb_species": "s__Polaribacter vadi", "ani": 78.9183, "matched_fragments": 435, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_009796785.1", "gtdb_species": "s__Polaribacter sp009796785", "ani": 78.892, "matched_fragments": 446, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002163675.1", "gtdb_species": "s__Polaribacter sp002163675", "ani": 78.853, "matched_fragments": 430, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009832745.1", "gtdb_species": "s__Polaribacter sp009832745", "ani": 78.8254, "matched_fragments": 395, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900105145.1", "gtdb_species": "s__Polaribacter sp900105145", "ani": 78.8244, "matched_fragments": 444, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001280865.1", "gtdb_species": "s__Polaribacter dokdonensis", "ani": 78.6902, "matched_fragments": 382, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Polaribacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_007827455.1", "gtdb_species": "s__VISM01 sp007827455", "ani": 77.8894, "matched_fragments": 316, "total_fragments": 883, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__VISM01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.351, "cell_length": 0.169, "doubling_h": null, "growth_tmp": 9.75, "optimum_tmp": 20.437, "optimum_ph": 7.25, "genome_size": 4097747.844, "gc_content": 31.525, "coding_genes": 3329.75, "rRNA16S_genes": 3.0, "tRNA_genes": 41.0, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.2, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 1.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Polaribacter", "tangerinus" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }