{
    "type": "genome",
    "identifier": "GCF_002201795.1",
    "organism": "Alkalitalea saponilacus",
    "title": "Alkalitalea saponilacus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chinese Academy of Agricultural Sciences",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002201795.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07200443",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "889453",
        "species_taxid": "889453",
        "organism_name": "Alkalitalea saponilacus",
        "infraspecific_name": "strain=SC/BZ-SP2",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/06/20",
        "asm_name": "ASM220179v1",
        "asm_submitter": "Chinese Academy of Agricultural Sciences",
        "gbrs_paired_asm": "GCA_002201795.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/201/795/GCF_002201795.1_ASM220179v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4775573",
        "genome_size_ungapped": "4775573",
        "gc_percent": "39.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002201795.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "3644",
        "protein_coding_gene_count": "3565",
        "non_coding_gene_count": "63",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-06-20",
    "dateModified": "2017-06-20",
    "datePublished": "2017-06-20",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Alkalitalea saponilacus"
        ],
        "sample_taxid": [
            "889453"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Washington State"
        ],
        "sample_host_location_id": [],
        "data_size": "1.333 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4775573",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "4775573",
        "N50 (bp)": "4775573",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.3",
        "Number of CDSs": "3578",
        "Average Protein Length": "377.6",
        "Coding Ratio (%)": "84.9",
        "Number of rRNAs": "12",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Alkalitalea saponilacus",
                "strain": "strain=SC/BZ-SP2",
                "accession": "GCA_002201795.1",
                "taxid": 889453,
                "species_taxid": 889453,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1589,
                "total_fragments": 1591,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alkalitalea saponilacus",
                "strain": "strain=DSM 24412",
                "accession": "GCA_900168165.1",
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                "species_taxid": 889453,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9414,
                "matched_fragments": 1471,
                "total_fragments": 1591,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Alkaliflexus imshenetskii",
                "strain": "strain=Z-7010",
                "accession": "GCA_000517065.1",
                "taxid": 286730,
                "species_taxid": 286730,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7254,
                "matched_fragments": 161,
                "total_fragments": 1591,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geofilum rhodophaeum",
                "strain": "strain=HF401",
                "accession": "GCA_002210225.1",
                "taxid": 1965019,
                "species_taxid": 1965019,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.613,
                "matched_fragments": 103,
                "total_fragments": 1591,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Geofilum rubicundum",
                "strain": "strain=JCM 15548",
                "accession": "GCA_000974365.1",
                "taxid": 472113,
                "species_taxid": 472113,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9822,
                "matched_fragments": 144,
                "total_fragments": 1591,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Marinilabilia rubra",
                "strain": "strain=WTE16",
                "accession": "GCA_003121985.1",
                "taxid": 2162893,
                "species_taxid": 2162893,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.3901,
                "matched_fragments": 76,
                "total_fragments": 1591,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002201795.1",
                "gtdb_species": "s__Natronoflexus saponilacus",
                "ani": 100.0,
                "matched_fragments": 1591,
                "total_fragments": 1591,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Natronoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004345615.1",
                "gtdb_species": "s__Natronoflexus pectinivorans",
                "ani": 89.8433,
                "matched_fragments": 1250,
                "total_fragments": 1591,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Natronoflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000517065.1",
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                "total_fragments": 1591,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Alkaliflexus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002210225.1",
                "gtdb_species": "s__Geofilum rhodophaeum",
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Geofilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000974365.1",
                "gtdb_species": "s__Geofilum rubicundum",
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                "matched_fragments": 145,
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                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Geofilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCA_002412555.1",
                "gtdb_species": "s__Geofilum sp002412555",
                "ani": 76.6119,
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                "total_fragments": 1591,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Bacteroidales;f__Marinilabiliaceae;g__Geofilum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.398,
        "cell_length": 0.74,
        "doubling_h": null,
        "growth_tmp": 35.0,
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        "optimum_ph": 9.7,
        "genome_size": 4702613.0,
        "gc_content": 39.3,
        "coding_genes": 3569.0,
        "rRNA16S_genes": 4.0,
        "tRNA_genes": 48.0,
        "gram_stain": 1.0,
        "sporulation": 0.0,
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        "range_salinity": null,
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        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Alkalitalea",
        "saponilacus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}