{ "type": "genome", "identifier": "GCF_002204745.1", "organism": "Hymenobacter amundsenii", "title": "Hymenobacter amundsenii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Masaryk University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002204745.1", "bioproject": "PRJNA224116", "biosample": "SAMN07187781", "wgs_master": "NIRR00000000.1", "refseq_category": "reference genome", "taxid": "2006685", "species_taxid": "2006685", "organism_name": "Hymenobacter amundsenii", "infraspecific_name": "strain=CCM 8682", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/21", "asm_name": "ASM220474v1", "asm_submitter": "Masaryk University", "gbrs_paired_asm": "GCA_002204745.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/204/745/GCF_002204745.1_ASM220474v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4582236", "genome_size_ungapped": "4582236", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "131", "contig_count": "131", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002204745.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4116", "protein_coding_gene_count": "4007", "non_coding_gene_count": "52", "pubmed_id": "30587382" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-21", "dateModified": "2017-06-21", "datePublished": "2017-06-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Hymenobacter amundsenii" ], "sample_taxid": [ "2006685" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Antarctica: deglaciated northern part of James Ross Island" ], "sample_host_location_id": [], "data_size": "1.298 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4582236", "Number of Sequences": "131", "Longest Sequences (bp)": "454736", "N50 (bp)": "103435", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.3", "Number of CDSs": "4054", "Average Protein Length": "316.6", "Coding Ratio (%)": "84.0", "Number of rRNAs": "1", "Number of tRNAs": "47", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Hymenobacter amundsenii", "strain": "strain=CCM 8682", "accession": "GCA_002204745.1", "taxid": 2006685, "species_taxid": 2006685, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1465, "total_fragments": 1467, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Hymenobacter actinosclerus", "strain": "strain=DSM 15310", "accession": "GCA_900111515.1", "taxid": 82805, "species_taxid": 82805, "relation_to_type": "type", "validated": true, "ani": 84.5766, "matched_fragments": 1066, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter aerophilus", "strain": "strain=DSM 13606", "accession": "GCA_000382225.1", "taxid": 119644, "species_taxid": 119644, "relation_to_type": "type", "validated": true, "ani": 84.4952, "matched_fragments": 1044, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter piscis", "strain": "strain=NST-14", "accession": "GCA_018760735.1", "taxid": 2839984, "species_taxid": 2839984, "relation_to_type": "type", "validated": true, "ani": 84.3738, "matched_fragments": 1083, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter psychrophilus", "strain": "strain=CGMCC 1.8975", "accession": "GCA_900107135.1", "taxid": 651662, "species_taxid": 651662, "relation_to_type": "type", "validated": true, "ani": 84.2916, "matched_fragments": 1106, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter lapidiphilus", "strain": "strain=P5342", "accession": "GCA_013377885.1", "taxid": 2608003, "species_taxid": 2608003, "relation_to_type": "type", "validated": true, "ani": 84.0361, "matched_fragments": 1075, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter terrestris", "strain": "strain=P5252", "accession": "GCA_013377905.1", "taxid": 2748310, "species_taxid": 2748310, "relation_to_type": "type", "validated": true, "ani": 83.6504, "matched_fragments": 993, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter swuensis", "strain": "strain=DY53", "accession": "GCA_000576555.1", "taxid": 1446467, "species_taxid": 1446467, "relation_to_type": "type", "validated": true, "ani": 81.1737, "matched_fragments": 921, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter duratus", "strain": "strain=BT646", "accession": "GCA_014698995.1", "taxid": 2771356, "species_taxid": 2771356, "relation_to_type": "type", "validated": true, "ani": 80.0982, "matched_fragments": 756, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter guriensis", "strain": "strain=BT594", "accession": "GCA_015773195.1", "taxid": 2793065, "species_taxid": 2793065, "relation_to_type": "type", "validated": true, "ani": 79.8159, "matched_fragments": 741, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter telluris", "strain": "strain=BT186", "accession": "GCA_017313265.1", "taxid": 2816474, "species_taxid": 2816474, "relation_to_type": "type", "validated": true, "ani": 79.5269, "matched_fragments": 722, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter metallicola", "strain": "strain=9PBR-1", "accession": "GCA_004745645.1", "taxid": 2563114, "species_taxid": 2563114, "relation_to_type": "type", "validated": true, "ani": 79.3589, "matched_fragments": 729, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter armeniacus", "strain": "strain=BT189", "accession": "GCA_014699055.1", "taxid": 2771358, "species_taxid": 2771358, "relation_to_type": "type", "validated": true, "ani": 79.2244, "matched_fragments": 689, "total_fragments": 1467, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hymenobacter terricola", "strain": "strain=3F2", "accession": "GCA_017921975.2", "taxid": 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