{ "type": "genome", "identifier": "GCF_002205635.1", "organism": "Sphingopyxis witflariensis", "title": "Sphingopyxis witflariensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Biochemistry and Biophysics", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002205635.1", "bioproject": "PRJNA224116", "biosample": "SAMN07204631", "wgs_master": "NISJ00000000.1", "refseq_category": "reference genome", "taxid": "173675", "species_taxid": "173675", "organism_name": "Sphingopyxis witflariensis", "infraspecific_name": "strain=DSM 14551", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/22", "asm_name": "ASM220563v1", "asm_submitter": "Institute of Biochemistry and Biophysics", "gbrs_paired_asm": "GCA_002205635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/205/635/GCF_002205635.1_ASM220563v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4306761", "genome_size_ungapped": "4306660", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "38", "contig_count": "38", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002205635.1-RS_2024_03_14", "annotation_date": "2024-03-14", "total_gene_count": "4217", "protein_coding_gene_count": "4093", "non_coding_gene_count": "62", "pubmed_id": "28883138" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-22", "dateModified": "2017-06-22", "datePublished": "2017-06-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Sphingopyxis witflariensis" ], "sample_taxid": [ "173675" ], "sample_host_organism": [], 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"organism_name": "Sphingopyxis granuli", "strain": "strain=NBRC 100800", "accession": "GCA_001591045.1", "taxid": 267128, "species_taxid": 267128, "relation_to_type": "type", "validated": true, "ani": 82.8804, "matched_fragments": 746, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas cavernae", "strain": "strain=K2R01-6", "accession": "GCA_003590775.1", "taxid": 2320861, "species_taxid": 2320861, "relation_to_type": "type", "validated": true, "ani": 78.2398, "matched_fragments": 369, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas hylomeconis", "strain": "strain=CCTCC AB 2013304", "accession": "GCA_025370105.1", "taxid": 1395958, "species_taxid": 1395958, "relation_to_type": "type", "validated": true, "ani": 77.768, "matched_fragments": 337, "total_fragments": 1417, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas alpina", 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