{ "type": "genome", "identifier": "GCF_002205645.1", "organism": "Roseateles aquatilis", "title": "Roseateles aquatilis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northwest A&F University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002205645.1", "bioproject": "PRJNA224116", "biosample": "SAMN07201749", "wgs_master": "NIOF00000000.1", "refseq_category": "reference genome", "taxid": "431061", "species_taxid": "431061", "organism_name": "Roseateles aquatilis", "infraspecific_name": "strain=CCUG 48205", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/22", "asm_name": "ASM220564v1", "asm_submitter": "Northwest A&F University", "gbrs_paired_asm": "GCA_002205645.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/205/645/GCF_002205645.1_ASM220564v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6385736", "genome_size_ungapped": "6385736", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "48", "contig_count": "48", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002205645.1-RS_2024_09_19", "annotation_date": "2024-09-19", "total_gene_count": "5650", "protein_coding_gene_count": "5527", "non_coding_gene_count": "66", "pubmed_id": "18175673" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-22", "dateModified": "2017-06-22", "datePublished": "2017-06-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseateles aquatilis" ], "sample_taxid": [ "431061" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.726 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6385736", "Number of Sequences": "48", "Longest Sequences (bp)": "1274247", "N50 (bp)": "363176", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.8", "Number of CDSs": "5607", "Average Protein Length": "340.4", "Coding Ratio (%)": "89.7", "Number of rRNAs": "3", "Number of tRNAs": "71", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mitsuaria chitinivorans", "strain": "strain=HWN-4", "accession": "GCA_002761755.1", "taxid": 2917965, "species_taxid": 2917965, "relation_to_type": "type", "validated": true, "ani": 86.6275, "matched_fragments": 1343, "total_fragments": 2107, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseateles depolymerans", "strain": "strain=DSM 11813", "accession": "GCA_003387155.1", "taxid": 76731, "species_taxid": 76731, "relation_to_type": "type", "validated": true, "ani": 82.6632, "matched_fragments": 1111, "total_fragments": 2107, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseateles terrae", "strain": "strain=CECT 7247", "accession": "GCA_014192155.1", "taxid": 431060, "species_taxid": 431060, "relation_to_type": "type", "validated": true, "ani": 82.1079, "matched_fragments": 1098, "total_fragments": 2107, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelomonas saccharophila", "strain": "strain=DSM 654", "accession": "GCA_004342485.1", "taxid": 304, "species_taxid": 304, "relation_to_type": "type", "validated": true, "ani": 81.0277, "matched_fragments": 883, "total_fragments": 2107, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pelomonas puraquae", "strain": "strain=CCUG 52769", "accession": "GCA_002205845.1", "taxid": 431059, "species_taxid": 431059, "relation_to_type": "type", "validated": true, "ani": 80.4447, "matched_fragments": 857, "total_fragments": 2107, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_002933415.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 80.3724, "matched_fragments": 659, "total_fragments": 2107, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000190375.2", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 80.3379, "matched_fragments": 686, "total_fragments": 2107, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Schlegelella thermodepolymerans", "strain": "strain=DSM 15344", "accession": "GCA_015476235.1", "taxid": 215580, "species_taxid": 215580, "relation_to_type": "type", "validated": true, "ani": 80.3269, "matched_fragments": 684, "total_fragments": 2107, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000420125.1", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 80.2448, "matched_fragments": 719, "total_fragments": 2107, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus natans", "strain": "strain=ATCC 13338", "accession": "GCA_900156335.1", "taxid": 34103, "species_taxid": 34103, "relation_to_type": "type", "validated": true, "ani": 80.149, "matched_fragments": 689, "total_fragments": 2107, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella azotifigens", "strain": "strain=DSM 21438", "accession": "GCA_006519715.1", 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78.9343, "matched_fragments": 677, "total_fragments": 2107, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter pinisoli", "strain": "strain=MAH-25", "accession": "GCA_009758015.1", "taxid": 2682844, "species_taxid": 2682844, "relation_to_type": "type", "validated": true, "ani": 78.8975, "matched_fragments": 653, "total_fragments": 2107, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hydrogenophaga crocea", "strain": "strain=BA0156", "accession": "GCA_011388215.1", "taxid": 2716225, "species_taxid": 2716225, "relation_to_type": "type", "validated": true, "ani": 78.5915, "matched_fragments": 628, "total_fragments": 2107, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002205645.1", "gtdb_species": "s__Mitsuaria aquatilis", "ani": 100.0, "matched_fragments": 2105, "total_fragments": 2107, 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