{ "type": "genome", "identifier": "GCF_002205845.1", "organism": "Roseateles puraquae", "title": "Roseateles puraquae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northwest A&F University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002205845.1", "bioproject": "PRJNA224116", "biosample": "SAMN07204398", "wgs_master": "NISI00000000.1", "refseq_category": "reference genome", "taxid": "431059", "species_taxid": "431059", "organism_name": "Roseateles puraquae", "infraspecific_name": "strain=CCUG 52769", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/22", "asm_name": "ASM220584v1", "asm_submitter": "Northwest A&F University", "gbrs_paired_asm": "GCA_002205845.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/205/845/GCF_002205845.1_ASM220584v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6057990", "genome_size_ungapped": "6057990", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "43", "contig_count": "43", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002205845.1-RS_2024_04_02", "annotation_date": "2024-04-02", "total_gene_count": "5549", "protein_coding_gene_count": "5437", "non_coding_gene_count": "60", "pubmed_id": "17978231" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-22", "dateModified": "2017-06-22", "datePublished": "2017-06-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Roseateles puraquae" ], "sample_taxid": [ "431059" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.643 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6057990", "Number of Sequences": "43", "Longest Sequences (bp)": "1549710", "N50 (bp)": "489219", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.4", "Number of CDSs": "5508", "Average Protein Length": "339.0", "Coding Ratio (%)": "92.5", "Number of rRNAs": "3", "Number of tRNAs": "62", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pelomonas puraquae", "strain": "strain=CCUG 52769", "accession": "GCA_002205845.1", "taxid": 431059, "species_taxid": 431059, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1998, "total_fragments": 2000, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pelomonas saccharophila", "strain": "strain=DSM 654", "accession": "GCA_004342485.1", "taxid": 304, "species_taxid": 304, "relation_to_type": "type", "validated": true, "ani": 85.0588, "matched_fragments": 1239, "total_fragments": 2000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mitsuaria chitinivorans", "strain": "strain=HWN-4", "accession": "GCA_002761755.1", "taxid": 2917965, "species_taxid": 2917965, "relation_to_type": "type", "validated": true, "ani": 80.4136, "matched_fragments": 824, "total_fragments": 2000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseateles depolymerans", "strain": "strain=DSM 11813", "accession": "GCA_003387155.1", "taxid": 76731, "species_taxid": 76731, "relation_to_type": "type", "validated": true, "ani": 80.144, "matched_fragments": 784, "total_fragments": 2000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella dechloratans", "strain": "strain=CCUG 30977", "accession": "GCA_021049305.1", "taxid": 36863, "species_taxid": 36863, "relation_to_type": "type", "validated": true, "ani": 80.0731, "matched_fragments": 682, "total_fragments": 2000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ideonella benzenivorans", "strain": "strain=B7", "accession": "GCA_020387415.1", "taxid": 2831643, "species_taxid": 2831643, "relation_to_type": "type", "validated": true, "ani": 79.8991, "matched_fragments": 631, "total_fragments": 2000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rubrivivax benzoatilyticus", "strain": "strain=JA2", "accession": "GCA_000190375.2", "taxid": 316997, "species_taxid": 316997, "relation_to_type": "type", "validated": true, "ani": 79.7561, "matched_fragments": 641, "total_fragments": 2000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium commune", "strain": "strain=DSM 11901", "accession": "GCA_004362855.1", "taxid": 70586, "species_taxid": 70586, "relation_to_type": "type", "validated": true, "ani": 79.6923, "matched_fragments": 525, "total_fragments": 2000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus sulfidivorans", "strain": "strain=D-501", "accession": "GCA_013426975.1", "taxid": 639200, "species_taxid": 639200, "relation_to_type": "type", "validated": true, "ani": 79.6555, "matched_fragments": 640, "total_fragments": 2000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Roseateles terrae", "strain": "strain=CECT 7247", "accession": "GCA_014192155.1", "taxid": 431060, "species_taxid": 431060, "relation_to_type": "type", "validated": true, "ani": 79.5937, "matched_fragments": 743, "total_fragments": 2000, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paucibacter toxinivorans", "strain": "strain=DSM 16998", "accession": "GCA_004362525.1", "taxid": 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