{ "type": "genome", "identifier": "GCF_002206625.1", "organism": "Polynucleobacter campilacus", "title": "Polynucleobacter campilacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Innsbruck", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002206625.1", "bioproject": "PRJNA224116", "biosample": "SAMN07121064", "wgs_master": "NGUP00000000.1", "refseq_category": "reference genome", "taxid": "1743163", "species_taxid": "1743163", "organism_name": "Polynucleobacter campilacus", "infraspecific_name": "strain=MWH-Feld-100", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/23", "asm_name": "ASM220662v1", "asm_submitter": "University of Innsbruck", "gbrs_paired_asm": "GCA_002206625.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/206/625/GCF_002206625.1_ASM220662v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1975812", "genome_size_ungapped": "1975812", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "9", "contig_count": "9", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002206625.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2074", "protein_coding_gene_count": "2001", "non_coding_gene_count": "44", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-23", "dateModified": "2017-06-23", "datePublished": "2017-06-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Polynucleobacter campilacus" ], "sample_taxid": [ "1743163" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany: Lake Feldsee, Schwarzwald" ], "sample_host_location_id": [], "data_size": "0.564 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1975812", "Number of Sequences": "9", "Longest Sequences (bp)": "890706", "N50 (bp)": "595323", "Gap Ratio (%)": "0.000253", "GCcontent (%)": "45.2", "Number of CDSs": "2016", "Average Protein Length": "302.3", "Coding Ratio (%)": "92.5", "Number of rRNAs": "3", "Number of tRNAs": "37", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Polynucleobacter campilacus", "strain": "strain=MWH-Feld-100", "accession": "GCA_002206625.1", "taxid": 1743163, "species_taxid": 1743163, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 655, "total_fragments": 655, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Polynucleobacter nymphae", "strain": "strain=AP-Mumm-500A-B3", "accession": "GCA_018882155.1", "taxid": 2081043, "species_taxid": 2081043, "relation_to_type": "type", "validated": true, "ani": 85.2263, "matched_fragments": 541, "total_fragments": 655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter hirudinilacicola", "strain": "strain=MWH-EgelM1-30-B4", "accession": "GCA_002192535.1", "taxid": 1743166, "species_taxid": 1743166, "relation_to_type": "type", "validated": true, "ani": 83.262, "matched_fragments": 473, "total_fragments": 655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter parvulilacunae", "strain": "strain=Ross1-W9", "accession": "GCA_018881715.1", "taxid": 1855631, "species_taxid": 1855631, "relation_to_type": "type", "validated": true, "ani": 80.8928, "matched_fragments": 353, "total_fragments": 655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter yangtzensis", "strain": "strain=MWH-JaK3", "accession": "GCA_001595965.1", "taxid": 1743159, "species_taxid": 1743159, "relation_to_type": "type", "validated": true, "ani": 80.8698, "matched_fragments": 363, "total_fragments": 655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter ibericus", "strain": "strain=es-MAR-2", "accession": "GCA_018687955.1", "taxid": 1819725, "species_taxid": 1819725, "relation_to_type": "type", "validated": true, "ani": 80.859, "matched_fragments": 354, "total_fragments": 655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter alcilacus", "strain": "strain=UK-Pondora-W15", "accession": "GCA_018881545.1", "taxid": 1819739, "species_taxid": 1819739, "relation_to_type": "type", "validated": true, "ani": 80.6397, "matched_fragments": 389, "total_fragments": 655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter asymbioticus", "strain": "strain=QLW-P1DMWA-1", "accession": "GCA_000016345.1", "taxid": 576611, "species_taxid": 576611, "relation_to_type": "type", "validated": true, "ani": 80.4825, "matched_fragments": 318, "total_fragments": 655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter meluiroseus", "strain": "strain=AP-Melu-1000-B4", "accession": "GCA_900205755.1", "taxid": 1938814, "species_taxid": 1938814, "relation_to_type": "type", "validated": true, "ani": 80.0959, "matched_fragments": 207, "total_fragments": 655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter aenigmaticus", "strain": "strain=MWH-K35W1", "accession": "GCA_002206635.1", "taxid": 1743164, "species_taxid": 1743164, "relation_to_type": "type", "validated": true, "ani": 79.8558, "matched_fragments": 276, "total_fragments": 655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter bastaniensis", "strain": "strain=AP-Basta-1000A-D1", "accession": "GCA_018882205.1", "taxid": 2081039, "species_taxid": 2081039, "relation_to_type": "type", "validated": true, "ani": 79.7756, "matched_fragments": 315, "total_fragments": 655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter sphagniphilus", "strain": "strain=MWH-Weng1-1", "accession": "GCA_001953355.1", "taxid": 1743169, "species_taxid": 1743169, "relation_to_type": "type", "validated": true, "ani": 79.6941, "matched_fragments": 232, "total_fragments": 655, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polynucleobacter brandtiae", "strain": "strain=UB-Domo-W1", "accession": "GCA_002797575.1", "taxid": 1938816, "species_taxid": 1938816, "relation_to_type": "type", "validated": true, "ani": 78.9583, "matched_fragments": 209, "total_fragments": 655, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002206625.1", "gtdb_species": "s__Polynucleobacter campilacus", "ani": 100.0, "matched_fragments": 655, "total_fragments": 655, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_018881635.1", "gtdb_species": "s__Polynucleobacter sp018881635", "ani": 92.8513, "matched_fragments": 586, "total_fragments": 655, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Polynucleobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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