{
    "type": "genome",
    "identifier": "GCF_002209445.1",
    "organism": "Capnocytophaga endodontalis",
    "title": "Capnocytophaga endodontalis",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Chosun University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002209445.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07125685",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "2708117",
        "species_taxid": "2708117",
        "organism_name": "Capnocytophaga endodontalis",
        "infraspecific_name": "strain=ChDC OS43",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/06/27",
        "asm_name": "ASM220944v1",
        "asm_submitter": "Chosun University",
        "gbrs_paired_asm": "GCA_002209445.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/209/445/GCF_002209445.1_ASM220944v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3412686",
        "genome_size_ungapped": "3412686",
        "gc_percent": "38.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-05",
        "total_gene_count": "3134",
        "protein_coding_gene_count": "3037",
        "non_coding_gene_count": "63",
        "pubmed_id": "29181783"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-06-27",
    "dateModified": "2017-06-27",
    "datePublished": "2017-06-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Capnocytophaga sp. ChDC OS43"
        ],
        "sample_taxid": [
            "209053"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [
            "refractory periapical abscess"
        ],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Gwangju"
        ],
        "sample_host_location_id": [],
        "data_size": "0.951 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3412686",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3412686",
        "N50 (bp)": "3412686",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "38.2",
        "Number of CDSs": "3052",
        "Average Protein Length": "335.5",
        "Coding Ratio (%)": "90.0",
        "Number of rRNAs": "9",
        "Number of tRNAs": "47",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Capnocytophaga endodontalis",
                "strain": "strain=ChDC OS43",
                "accession": "GCA_002209445.1",
                "taxid": 2708117,
                "species_taxid": 2708117,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1135,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Capnocytophaga periodontitidis",
                "strain": "strain=p1a2",
                "accession": "GCA_016126015.1",
                "taxid": 2795027,
                "species_taxid": 2795027,
                "relation_to_type": "type",
                "validated": true,
                "ani": 96.4871,
                "matched_fragments": 925,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "inconclusive"
            },
            {
                "organism_name": "Capnocytophaga sputigena",
                "strain": "strain=NCTC11653",
                "accession": "GCA_900446695.1",
                "taxid": 1019,
                "species_taxid": 1019,
                "relation_to_type": "type",
                "validated": true,
                "ani": 92.3185,
                "matched_fragments": 868,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga ochracea",
                "strain": "strain=DSM 7271",
                "accession": "GCA_000023285.1",
                "taxid": 1018,
                "species_taxid": 1018,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9618,
                "matched_fragments": 600,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga ochracea",
                "strain": "strain=FDAARGOS_1468",
                "accession": "GCA_019930725.1",
                "taxid": 1018,
                "species_taxid": 1018,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.9439,
                "matched_fragments": 607,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Capnocytophaga leadbetteri",
                "strain": "strain=DSM 22902",
                "accession": "GCA_003054025.1",
                "taxid": 327575,
                "species_taxid": 327575,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4726,
                "matched_fragments": 451,
                "total_fragments": 1137,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002209445.1",
                "gtdb_species": "s__Capnocytophaga endodontalis",
                "ani": 100.0,
                "matched_fragments": 1135,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.66",
                "min_intra_species_ani": "96.51",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 9,
                "status": "conclusive"
            },
            {
                "accession": "GCF_900446695.1",
                "gtdb_species": "s__Capnocytophaga sputigena",
                "ani": 92.3004,
                "matched_fragments": 868,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.52",
                "min_intra_species_ani": "96.32",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 8,
                "status": "-"
            },
            {
                "accession": "GCF_000023285.1",
                "gtdb_species": "s__Capnocytophaga ochracea",
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                "matched_fragments": 599,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.34",
                "min_intra_species_ani": "96.09",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 17,
                "status": "-"
            },
            {
                "accession": "GCF_002999135.1",
                "gtdb_species": "s__Capnocytophaga sp002999135",
                "ani": 82.6118,
                "matched_fragments": 423,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_003054025.1",
                "gtdb_species": "s__Capnocytophaga leadbetteri",
                "ani": 81.4379,
                "matched_fragments": 453,
                "total_fragments": 1137,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Capnocytophaga",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.46",
                "min_intra_species_ani": "95.36",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.388,
        "cell_length": 0.5,
        "doubling_h": null,
        "growth_tmp": 36.625,
        "optimum_tmp": 36.727,
        "optimum_ph": 6.75,
        "genome_size": 2704681.185,
        "gc_content": 38.962,
        "coding_genes": 2322.458,
        "rRNA16S_genes": 3.5,
        "tRNA_genes": 47.016,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": null,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.333,
        "aerobic_respiration": 0.666,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Capnocytophaga",
        "endodontalis"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}