{ "type": "genome", "identifier": "GCF_002209535.1", "organism": "Achromobacter marplatensis", "title": "Achromobacter marplatensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northwest A&F University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002209535.1", "bioproject": "PRJNA224116", "biosample": "SAMN07270369", "wgs_master": "NJIG00000000.1", "refseq_category": "na", "taxid": "470868", "species_taxid": "470868", "organism_name": "Achromobacter marplatensis", "infraspecific_name": "strain=B2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/06/27", "asm_name": "ASM220953v1", "asm_submitter": "Northwest A&F University", "gbrs_paired_asm": "GCA_002209535.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/209/535/GCF_002209535.1_ASM220953v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6885213", "genome_size_ungapped": "6885213", "gc_percent": "65.000000", "replicon_count": "0", "scaffold_count": "61", "contig_count": "61", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002209535.1-RS_2024_03_19", "annotation_date": "2024-03-19", "total_gene_count": "6393", "protein_coding_gene_count": "6276", "non_coding_gene_count": "74", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-06-27", "dateModified": "2017-06-27", "datePublished": "2017-06-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Achromobacter marplatensis" ], "sample_taxid": [ "470868" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "1.901 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6885213", "Number of Sequences": "61", "Longest Sequences (bp)": "836022", "N50 (bp)": "471181", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.1", "Number of CDSs": "6348", "Average Protein Length": "325.8", "Coding Ratio (%)": "90.1", "Number of rRNAs": "5", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Achromobacter marplatensis", "strain": "strain=B2", "accession": "GCA_002209535.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2263, "total_fragments": 2268, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=CECT 7342", "accession": "GCA_003315095.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 99.9977, "matched_fragments": 2255, "total_fragments": 2268, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter marplatensis", "strain": "strain=LMG 26219", "accession": "GCA_902859635.1", "taxid": 470868, "species_taxid": 470868, "relation_to_type": "type", "validated": true, "ani": 99.9932, "matched_fragments": 2254, "total_fragments": 2268, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Achromobacter pestifer", "strain": "strain=LMG 3431", "accession": "GCA_902859625.1", "taxid": 1353889, "species_taxid": 1353889, "relation_to_type": "type", "validated": true, "ani": 88.5898, "matched_fragments": 1781, "total_fragments": 2268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter kerstersii", "strain": "strain=LMG 3441", "accession": "GCA_902859595.1", "taxid": 1353890, "species_taxid": 1353890, "relation_to_type": "type", "validated": true, "ani": 87.7722, "matched_fragments": 1731, "total_fragments": 2268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter spanius", "strain": "strain=LMG 5911", "accession": "GCA_902859605.1", "taxid": 217203, "species_taxid": 217203, "relation_to_type": "suspected-type", "validated": true, "ani": 87.1472, "matched_fragments": 1596, "total_fragments": 2268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter piechaudii", "strain": "strain=LMG 1873", "accession": "GCA_902859685.1", "taxid": 72556, "species_taxid": 72556, "relation_to_type": "type", "validated": true, "ani": 86.8941, "matched_fragments": 1619, "total_fragments": 2268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter veterisilvae", "strain": "strain=LMG 30378", "accession": "GCA_900496975.1", "taxid": 2069367, "species_taxid": 2069367, "relation_to_type": "type", "validated": true, "ani": 86.619, "matched_fragments": 1468, "total_fragments": 2268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter deleyi", "strain": "strain=LMG 3458", "accession": "GCA_902859705.1", "taxid": 1353891, "species_taxid": 1353891, "relation_to_type": "type", "validated": true, "ani": 85.9437, "matched_fragments": 1599, "total_fragments": 2268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter xylosoxidans", "strain": "strain=PartM-Axylosoxidans-RM8376", "accession": "GCA_022870085.1", "taxid": 85698, "species_taxid": 85698, "relation_to_type": "type", "validated": true, "ani": 85.6313, "matched_fragments": 1587, "total_fragments": 2268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Achromobacter insolitus", "strain": "strain=NCTC 13520", "accession": "GCA_024168865.1", "taxid": 217204, "species_taxid": 217204, "relation_to_type": "type", "validated": true, "ani": 85.299, "matched_fragments": 1557, "total_fragments": 2268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bordetella bronchiseptica", "strain": "strain=CCUG 219", "accession": "GCA_021391275.1", "taxid": 518, "species_taxid": 518, "relation_to_type": "suspected-type", "validated": true, "ani": 81.7985, "matched_fragments": 856, "total_fragments": 2268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eoetvoesia caeni", "strain": "strain=PB3-7B", "accession": "GCA_022688825.1", "taxid": 645616, "species_taxid": 645616, "relation_to_type": "type", "validated": true, "ani": 77.6791, "matched_fragments": 344, "total_fragments": 2268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ralstonia solanacearum", "strain": "strain=K60", "accession": "GCA_002251695.1", "taxid": 305, "species_taxid": 305, "relation_to_type": "type", "validated": true, "ani": 77.6027, "matched_fragments": 380, "total_fragments": 2268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Herbaspirillum lusitanum", "strain": "strain=P6-12", "accession": "GCA_000256565.1", "taxid": 213312, "species_taxid": 213312, "relation_to_type": "type", "validated": true, "ani": 77.2796, "matched_fragments": 295, "total_fragments": 2268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoduganella aquatica", "strain": "strain=FT127W", "accession": "GCA_009857595.1", "taxid": 2660641, "species_taxid": 2660641, "relation_to_type": "type", "validated": true, "ani": 77.245, "matched_fragments": 433, "total_fragments": 2268, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoxanthomonas yeongjuensis", "strain": "strain=DSM 18204", "accession": "GCA_010093345.1", "taxid": 377616, "species_taxid": 377616, "relation_to_type": "type", "validated": true, "ani": 75.7719, "matched_fragments": 155, "total_fragments": 2268, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002209535.1", "gtdb_species": "s__Achromobacter marplatensis", "ani": 100.0, "matched_fragments": 2263, "total_fragments": 2268, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.15", "min_intra_species_ani": "97.44", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.90", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_012928505.1", "gtdb_species": "s__Achromobacter sp012928505", "ani": 91.7163, "matched_fragments": 1816, "total_fragments": 2268, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014170335.1", "gtdb_species": "s__Achromobacter sp014170335", "ani": 91.1348, "matched_fragments": 1819, "total_fragments": 2268, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002975275.1", "gtdb_species": "s__Achromobacter sp002975275", "ani": 89.9459, "matched_fragments": 1757, "total_fragments": 2268, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902859625.1", "gtdb_species": "s__Achromobacter pestifer", "ani": 88.6041, "matched_fragments": 1779, "total_fragments": 2268, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_902859595.1", "gtdb_species": "s__Achromobacter kerstersii", "ani": 87.7811, "matched_fragments": 1729, "total_fragments": 2268, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.61", "min_intra_species_ani": "98.61", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_013116765.2", "gtdb_species": "s__Achromobacter deleyi_A", "ani": 86.9286, "matched_fragments": 1591, "total_fragments": 2268, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003600685.1", "gtdb_species": "s__Achromobacter spanius_B", "ani": 86.8944, "matched_fragments": 1565, "total_fragments": 2268, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.56", "min_intra_species_ani": "98.20", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.92", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003994415.1", "gtdb_species": "s__Achromobacter spanius_C", "ani": 86.7514, "matched_fragments": 1568, "total_fragments": 2268, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.60", "min_intra_species_ani": "98.60", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000236785.1", "gtdb_species": "s__Achromobacter arsenitoxydans", "ani": 86.0873, "matched_fragments": 1497, "total_fragments": 2268, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002885955.2", "gtdb_species": "s__Achromobacter pulmonis_A", "ani": 86.0429, "matched_fragments": 1415, "total_fragments": 2268, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Achromobacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.97", "min_intra_species_ani": "98.79", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCA_002068855.1", "gtdb_species": "s__UBA1934 sp002068855", "ani": 76.02, "matched_fragments": 80, "total_fragments": 2268, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Rhodocyclaceae;g__UBA1934", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_010093345.1", "gtdb_species": "s__Pseudoxanthomonas_A yeongjuensis", "ani": 75.743, "matched_fragments": 157, "total_fragments": 2268, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Xanthomonadales;f__Xanthomonadaceae;g__Pseudoxanthomonas_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.302, "cell_length": 0.0, "doubling_h": null, "growth_tmp": 30.807, "optimum_tmp": 29.833, "optimum_ph": null, "genome_size": 6480678.912, "gc_content": 65.825, "coding_genes": 5804.816, "rRNA16S_genes": 3.5, "tRNA_genes": 57.375, "gram_stain": 0.0, "sporulation": 0.0, "motility": 0.75, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Achromobacter", "marplatensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }