{ "type": "genome", "identifier": "GCF_002214185.1", "organism": "Streptomyces capitiformicae", "title": "Streptomyces capitiformicae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Northeast Agricultural University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002214185.1", "bioproject": "PRJNA224116", "biosample": "SAMN07260326", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2014920", "species_taxid": "2014920", "organism_name": "Streptomyces capitiformicae", "infraspecific_name": "strain=1H-SSA4", "isolate": "na", "version_status": "latest", "assembly_level": "Chromosome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/03", "asm_name": "ASM221418v1", "asm_submitter": "Northeast Agricultural University", "gbrs_paired_asm": "GCA_002214185.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/214/185/GCF_002214185.1_ASM221418v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10989391", "genome_size_ungapped": "10989361", "gc_percent": "70.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002214185.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "10013", "protein_coding_gene_count": "9274", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-03", "dateModified": "2017-07-03", "datePublished": "2017-07-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces capitiformicae" ], "sample_taxid": [ "2014920" ], "sample_host_organism": [ "ant" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China:Northeast Agriculture University (Harbin, Heilongjiang, China)" ], "sample_host_location_id": [], "data_size": "2.972 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10989391", "Number of Sequences": "1", "Longest Sequences (bp)": "10989391", "N50 (bp)": "10989391", "Gap Ratio (%)": "0.000273", "GCcontent (%)": "70.0", "Number of CDSs": "10096", "Average Protein Length": "315.9", "Coding Ratio (%)": "87.1", "Number of rRNAs": "2", "Number of tRNAs": "90", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces capitiformicae", "strain": "strain=1H-SSA4", "accession": "GCA_002214185.1", "taxid": 2014920, "species_taxid": 2014920, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3663, "total_fragments": 3663, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces capitiformicae", "strain": "strain=CGMCC 4.7403", "accession": "GCA_014653855.1", "taxid": 2014920, "species_taxid": 2014920, "relation_to_type": "type", "validated": true, "ani": 99.9202, "matched_fragments": 3482, "total_fragments": 3663, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces tailanensis", "strain": "strain=TRM68348", "accession": "GCA_008386495.1", "taxid": 2569858, "species_taxid": 2569858, "relation_to_type": "type", "validated": true, "ani": 93.2675, "matched_fragments": 2374, "total_fragments": 3663, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces adelaidensis", "strain": "strain=CAP261", "accession": "GCA_016598475.1", "taxid": 2796465, "species_taxid": 2796465, "relation_to_type": "type", "validated": true, "ani": 88.5661, 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