{ "type": "genome", "identifier": "GCF_002214365.1", "organism": "Thermococcus celer Vu 13 = JCM 8558", "title": "Thermococcus celer Vu 13 = JCM 8558", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Ecole Normale Superieure de Lyon", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002214365.1", "bioproject": "PRJNA224116", "biosample": "SAMN03324154", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1293037", "species_taxid": "2264", "organism_name": "Thermococcus celer Vu 13 = JCM 8558", "infraspecific_name": "strain=Vu 13", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/05", "asm_name": "ASM221436v1", "asm_submitter": "Ecole Normale Superieure de Lyon", "gbrs_paired_asm": "GCA_002214365.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/214/365/GCF_002214365.1_ASM221436v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "1866819", "genome_size_ungapped": "1866819", "gc_percent": "56.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002214365.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "2049", "protein_coding_gene_count": "1957", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-05", "dateModified": "2017-07-05", "datePublished": "2017-07-05", "_annotation": { "sample_count": 1, "sample_organism": [ "Thermococcus celer Vu 13 = JCM 8558" ], "sample_taxid": [ "1293037" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: volcano island" ], "sample_host_location_id": [], "data_size": "0.526 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1866819", "Number of Sequences": "1", "Longest Sequences (bp)": "1866819", "N50 (bp)": "1866819", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "56.4", "Number of CDSs": "2015", "Average Protein Length": "280.4", "Coding Ratio (%)": "90.8", "Number of rRNAs": "4", "Number of tRNAs": "44", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Thermococcus celer", "strain": "strain=Vu 13", "accession": "GCA_002214365.1", "taxid": 2264, "species_taxid": 2264, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012027615.1", "gtdb_species": "s__Thermococcus sp012027615", "ani": 81.3026, "matched_fragments": 431, "total_fragments": 622, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000265525.1", "gtdb_species": "s__Thermococcus cleftensis", "ani": 81.0566, "matched_fragments": 393, "total_fragments": 622, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.89", "min_intra_species_ani": "97.89", 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"min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_011050175.1", "gtdb_species": "s__Thermococcus sp011050175", "ani": 80.5053, "matched_fragments": 211, "total_fragments": 622, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_012027395.1", "gtdb_species": "s__Thermococcus sp012027395", "ani": 79.749, "matched_fragments": 339, "total_fragments": 622, "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", 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