{
    "type": "genome",
    "identifier": "GCF_002214485.1",
    "organism": "Thermococcus pacificus",
    "title": "Thermococcus pacificus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Ecole Normale Superieure de Lyon",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002214485.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03324161",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "71998",
        "species_taxid": "71998",
        "organism_name": "Thermococcus pacificus",
        "infraspecific_name": "strain=P-4",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/07/05",
        "asm_name": "ASM221448v1",
        "asm_submitter": "Ecole Normale Superieure de Lyon",
        "gbrs_paired_asm": "GCA_002214485.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/214/485/GCF_002214485.1_ASM221448v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "1785673",
        "genome_size_ungapped": "1785673",
        "gc_percent": "54.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002214485.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "2007",
        "protein_coding_gene_count": "1933",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-07-05",
    "dateModified": "2017-07-05",
    "datePublished": "2017-07-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermococcus pacificus"
        ],
        "sample_taxid": [
            "71998"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "New Zealand: Bay of plenty"
        ],
        "sample_host_location_id": [],
        "data_size": "0.507 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1785673",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1785673",
        "N50 (bp)": "1785673",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "54.2",
        "Number of CDSs": "1962",
        "Average Protein Length": "275.7",
        "Coding Ratio (%)": "90.9",
        "Number of rRNAs": "4",
        "Number of tRNAs": "45",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thermococcus pacificus",
                "strain": "strain=P-4",
                "accession": "GCA_002214485.1",
                "taxid": 71998,
                "species_taxid": 71998,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 595,
                "total_fragments": 595,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermococcus zilligii",
                "strain": "strain=AN1",
                "accession": "GCA_000258515.1",
                "taxid": 54076,
                "species_taxid": 54076,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.6395,
                "matched_fragments": 367,
                "total_fragments": 595,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus siculi",
                "strain": "strain=RG-20",
                "accession": "GCA_002214505.1",
                "taxid": 72803,
                "species_taxid": 72803,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8863,
                "matched_fragments": 445,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus radiotolerans",
                "strain": "strain=EJ2",
                "accession": "GCA_002214565.1",
                "taxid": 187880,
                "species_taxid": 187880,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.1413,
                "matched_fragments": 393,
                "total_fragments": 595,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus stetteri",
                "strain": "strain=DSM 5262",
                "accession": "GCA_017873335.1",
                "taxid": 49900,
                "species_taxid": 49900,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.158,
                "matched_fragments": 342,
                "total_fragments": 595,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002214485.1",
                "gtdb_species": "s__Thermococcus pacificus",
                "ani": 100.0,
                "matched_fragments": 595,
                "total_fragments": 595,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000258515.1",
                "gtdb_species": "s__Thermococcus zilligii",
                "ani": 83.6648,
                "matched_fragments": 366,
                "total_fragments": 595,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002214505.1",
                "gtdb_species": "s__Thermococcus siculi",
                "ani": 82.8863,
                "matched_fragments": 445,
                "total_fragments": 595,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000221185.1",
                "gtdb_species": "s__Thermococcus sp000221185",
                "ani": 81.8323,
                "matched_fragments": 422,
                "total_fragments": 595,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000265525.1",
                "gtdb_species": "s__Thermococcus cleftensis",
                "ani": 81.332,
                "matched_fragments": 410,
                "total_fragments": 595,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.89",
                "min_intra_species_ani": "97.89",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002214565.1",
                "gtdb_species": "s__Thermococcus radiotolerans",
                "ani": 81.1358,
                "matched_fragments": 393,
                "total_fragments": 595,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.62",
                "min_intra_species_ani": "95.62",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_000022365.1",
                "gtdb_species": "s__Thermococcus gammatolerans",
                "ani": 79.7422,
                "matched_fragments": 296,
                "total_fragments": 595,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.06,
        "cell_length": 0.06,
        "doubling_h": -0.025,
        "growth_tmp": 85.0,
        "optimum_tmp": 83.045,
        "optimum_ph": 7.116,
        "genome_size": 1785671.5,
        "gc_content": 54.2,
        "coding_genes": 1868.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.833,
        "range_salinity": 0.5,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
        "aerobic_respiration": 0.0,
        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Thermococcus",
        "pacificus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}