{
    "type": "genome",
    "identifier": "GCF_002214585.1",
    "organism": "Thermococcus profundus",
    "title": "Thermococcus profundus",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Ecole Normale Superieure de Lyon",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002214585.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03324163",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "49899",
        "species_taxid": "49899",
        "organism_name": "Thermococcus profundus",
        "infraspecific_name": "strain=DT 5432",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/07/05",
        "asm_name": "ASM221458v1",
        "asm_submitter": "Ecole Normale Superieure de Lyon",
        "gbrs_paired_asm": "GCA_002214585.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/214/585/GCF_002214585.1_ASM221458v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "2043143",
        "genome_size_ungapped": "2043143",
        "gc_percent": "53.000000",
        "replicon_count": "2",
        "scaffold_count": "2",
        "contig_count": "2",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002214585.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "2181",
        "protein_coding_gene_count": "2125",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-07-05",
    "dateModified": "2017-07-05",
    "datePublished": "2017-07-05",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Thermococcus profundus"
        ],
        "sample_taxid": [
            "49899"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Pacific Ocean: Middle Okinawa Trough"
        ],
        "sample_host_location_id": [],
        "data_size": "0.580 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2043143",
        "Number of Sequences": "2",
        "Longest Sequences (bp)": "2005098",
        "N50 (bp)": "2005098",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.1",
        "Number of CDSs": "2143",
        "Average Protein Length": "291.5",
        "Coding Ratio (%)": "91.7",
        "Number of rRNAs": "4",
        "Number of tRNAs": "44",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Thermococcus profundus",
                "strain": "strain=DT 5432",
                "accession": "GCA_002214585.1",
                "taxid": 49899,
                "species_taxid": 49899,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 680,
                "total_fragments": 680,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Thermococcus siculi",
                "strain": "strain=RG-20",
                "accession": "GCA_002214505.1",
                "taxid": 72803,
                "species_taxid": 72803,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.3674,
                "matched_fragments": 375,
                "total_fragments": 680,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus kodakarensis",
                "strain": "strain=KOD1",
                "accession": "GCA_000009965.1",
                "taxid": 311400,
                "species_taxid": 311400,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.4332,
                "matched_fragments": 370,
                "total_fragments": 680,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus pacificus",
                "strain": "strain=P-4",
                "accession": "GCA_002214485.1",
                "taxid": 71998,
                "species_taxid": 71998,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.4843,
                "matched_fragments": 317,
                "total_fragments": 680,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Thermococcus radiotolerans",
                "strain": "strain=EJ2",
                "accession": "GCA_002214565.1",
                "taxid": 187880,
                "species_taxid": 187880,
                "relation_to_type": "type",
                "validated": true,
                "ani": 80.1707,
                "matched_fragments": 289,
                "total_fragments": 680,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002214585.1",
                "gtdb_species": "s__Thermococcus profundus",
                "ani": 100.0,
                "matched_fragments": 680,
                "total_fragments": 680,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002214505.1",
                "gtdb_species": "s__Thermococcus siculi",
                "ani": 82.3523,
                "matched_fragments": 376,
                "total_fragments": 680,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_012027595.1",
                "gtdb_species": "s__Thermococcus sp012027595",
                "ani": 81.883,
                "matched_fragments": 421,
                "total_fragments": 680,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000221185.1",
                "gtdb_species": "s__Thermococcus sp000221185",
                "ani": 80.245,
                "matched_fragments": 323,
                "total_fragments": 680,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002214565.1",
                "gtdb_species": "s__Thermococcus radiotolerans",
                "ani": 80.1318,
                "matched_fragments": 291,
                "total_fragments": 680,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.62",
                "min_intra_species_ani": "95.62",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002214365.1",
                "gtdb_species": "s__Thermococcus celer",
                "ani": 79.4493,
                "matched_fragments": 272,
                "total_fragments": 680,
                "gtdb_taxonomy": "d__Archaea;p__Methanobacteriota_B;c__Thermococci;o__Thermococcales;f__Thermococcaceae;g__Thermococcus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.20",
                "min_intra_species_ani": "99.20",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.06,
        "cell_length": 0.06,
        "doubling_h": -0.201,
        "growth_tmp": 80.15,
        "optimum_tmp": 83.045,
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        "genome_size": 2043141.5,
        "gc_content": 53.125,
        "coding_genes": 2075.0,
        "rRNA16S_genes": 1.0,
        "tRNA_genes": 46.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
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        "range_salinity": 0.5,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 1.0,
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        "mesophilic_range_tmp": 0.0,
        "thermophilic_range_tmp": 1.0,
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        "bacillus_cell_shape": 0.0,
        "coccus_cell_shape": 1.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
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        "profundus"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}