{ "type": "genome", "identifier": "GCF_002216145.1", "organism": "Neisseria chenwenguii", "title": "Neisseria chenwenguii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "China disease prevention and control center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002216145.1", "bioproject": "PRJNA224116", "biosample": "SAMN05726023", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1853278", "species_taxid": "1853278", "organism_name": "Neisseria chenwenguii", "infraspecific_name": "strain=10023", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/10", "asm_name": "ASM221614v1", "asm_submitter": "China disease prevention and control center", "gbrs_paired_asm": "GCA_002216145.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/216/145/GCF_002216145.1_ASM221614v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2496444", "genome_size_ungapped": "2496444", "gc_percent": "54.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002216145.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2465", "protein_coding_gene_count": "2328", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-10", "dateModified": "2017-07-10", "datePublished": "2017-07-10", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria chenwenguii" ], "sample_taxid": [ "1853278" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Yushu Autonomous Prefecture, Qinghai Province" ], "sample_host_location_id": [], "data_size": "0.691 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.19, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2496444", "Number of Sequences": "1", "Longest Sequences (bp)": "2496444", "N50 (bp)": "2496444", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.0", "Number of CDSs": "2364", "Average Protein Length": "290.3", "Coding Ratio (%)": "82.5", "Number of rRNAs": "12", "Number of tRNAs": "58", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bergeriella denitrificans", "strain": "strain=NCTC10295", "accession": "GCA_900453875.1", "taxid": 494, "species_taxid": 494, "relation_to_type": "type", "validated": true, "ani": 81.4124, "matched_fragments": 490, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bergeriella denitrificans", "strain": "strain=NBRC 102155", "accession": "GCA_001592185.1", "taxid": 494, "species_taxid": 494, "relation_to_type": "type", "validated": true, "ani": 81.3912, "matched_fragments": 384, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=DSM 17713", "accession": "GCA_014054945.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 80.6565, "matched_fragments": 479, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria animalis", "strain": "strain=NCTC10212", "accession": "GCA_900636515.1", "taxid": 492, "species_taxid": 492, "relation_to_type": "type", "validated": true, "ani": 80.5688, "matched_fragments": 430, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria animalis", "strain": "strain=ATCC 49930", "accession": "GCA_008806995.1", "taxid": 492, "species_taxid": 492, "relation_to_type": "type", "validated": true, "ani": 80.5526, "matched_fragments": 431, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_022749515.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 80.5385, "matched_fragments": 475, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Morococcus cerebrosus", "strain": "strain=CIP 81.93", "accession": "GCA_000813705.1", "taxid": 1056807, "species_taxid": 1056807, "relation_to_type": "type", "validated": true, "ani": 80.5107, "matched_fragments": 433, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria sicca", "strain": "strain=ATCC 29256", "accession": "GCA_000174655.1", "taxid": 490, "species_taxid": 490, "relation_to_type": "suspected-type", "validated": true, "ani": 80.4669, "matched_fragments": 477, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria meningitidis", "strain": "strain=PartJ-Nmeningitidis-RM8376", "accession": "GCA_022869645.1", "taxid": 487, "species_taxid": 487, "relation_to_type": "type", "validated": true, "ani": 80.4036, "matched_fragments": 374, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=DSM 19151", "accession": "GCA_002108595.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 80.3743, "matched_fragments": 460, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria animalis", "strain": "strain=DSM 23392", "accession": "GCA_003795365.1", "taxid": 492, "species_taxid": 492, "relation_to_type": "type", "validated": true, "ani": 80.3393, "matched_fragments": 419, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=DSM 19151", "accession": "GCA_014055005.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 80.331, "matched_fragments": 487, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria meningitidis", "strain": "strain=NCTC10025", "accession": "GCA_900638555.1", "taxid": 487, "species_taxid": 487, "relation_to_type": "type", "validated": true, "ani": 80.2924, "matched_fragments": 383, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dentiae", "strain": "strain=NCTC13012", "accession": "GCA_900453685.1", "taxid": 194197, 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}, { "organism_name": "Neisseria perflava", "strain": "strain=CCUG 17915", "accession": "GCA_023472875.1", "taxid": 33053, "species_taxid": 33053, "relation_to_type": "suspected-type", "validated": true, "ani": 79.234, "matched_fragments": 386, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella testudinis", "strain": "strain=CCUG 63373m", "accession": "GCA_022870865.1", "taxid": 1282863, "species_taxid": 1282863, "relation_to_type": "type", "validated": true, "ani": 78.9969, "matched_fragments": 423, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria shayeganii", "strain": "strain=871", "accession": "GCA_000226875.1", "taxid": 607712, "species_taxid": 607712, "relation_to_type": "type", "validated": true, "ani": 78.7161, "matched_fragments": 290, "total_fragments": 832, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 91.19, 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