{ "type": "genome", "identifier": "GCF_002216775.1", "organism": "Virgibacillus phasianinus", "title": "Virgibacillus phasianinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyung Hee University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002216775.1", "bioproject": "PRJNA224116", "biosample": "SAMN07303499", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "2017483", "species_taxid": "2017483", "organism_name": "Virgibacillus phasianinus", "infraspecific_name": "strain=LM2416", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/12", "asm_name": "ASM221677v1", "asm_submitter": "Kyung Hee University", "gbrs_paired_asm": "GCA_002216775.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/216/775/GCF_002216775.1_ASM221677v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4071214", "genome_size_ungapped": "4071214", "gc_percent": "39.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002216775.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "4000", "protein_coding_gene_count": "3845", "non_coding_gene_count": "90", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-12", "dateModified": "2017-07-12", "datePublished": "2017-07-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Virgibacillus phasianinus" ], "sample_taxid": [ "2017483" ], "sample_host_organism": [ "Lophura swinhoii" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.152 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4071214", "Number of Sequences": "1", "Longest Sequences (bp)": "4071214", "N50 (bp)": "4071214", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.5", "Number of CDSs": "3958", "Average Protein Length": "289.9", "Coding Ratio (%)": "84.5", "Number of rRNAs": "21", "Number of tRNAs": "64", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Virgibacillus phasianinus", "strain": "strain=LM2416", "accession": "GCA_002216775.1", "taxid": 2017483, "species_taxid": 2017483, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1356, "total_fragments": 1357, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Virgibacillus necropolis", "strain": "strain=LMG 19488", "accession": "GCA_002224365.1", "taxid": 163877, "species_taxid": 163877, "relation_to_type": "type", "validated": true, "ani": 79.7857, "matched_fragments": 595, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus salitolerans", "strain": "strain=SCU50", "accession": "GCA_009650095.1", "taxid": 2663022, "species_taxid": 2663022, "relation_to_type": "type", "validated": true, "ani": 79.4037, "matched_fragments": 65, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraliobacillus zengyii", "strain": "strain=X-1125", "accession": "GCA_003268595.1", "taxid": 2213194, "species_taxid": 2213194, "relation_to_type": "type", "validated": true, "ani": 78.6216, "matched_fragments": 72, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus oceani", "strain": "strain=CGMCC 1.12754", "accession": "GCA_014638995.1", "taxid": 1479511, "species_taxid": 1479511, "relation_to_type": "type", "validated": true, "ani": 78.1311, "matched_fragments": 203, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus halodenitrificans", "strain": "strain=JCM 12304", "accession": "GCA_001310895.1", "taxid": 1482, "species_taxid": 1482, "relation_to_type": "type", "validated": true, "ani": 77.7229, "matched_fragments": 121, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibacillus sediminis", "strain": "strain=BH258", "accession": "GCA_005870085.1", "taxid": 2574734, "species_taxid": 2574734, "relation_to_type": "type", "validated": true, "ani": 77.4536, "matched_fragments": 71, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus subterraneus", "strain": "strain=CGMCC 1.7734", "accession": "GCA_900110695.1", "taxid": 621109, "species_taxid": 621109, "relation_to_type": "type", "validated": true, "ani": 77.4298, "matched_fragments": 164, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Virgibacillus indicus", "strain": "strain=P2-C2", "accession": "GCA_002266285.1", "taxid": 2024554, "species_taxid": 2024554, "relation_to_type": "type", "validated": true, "ani": 77.3316, "matched_fragments": 173, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ornithinibacillus gellani", "strain": "strain=LJ137", "accession": "GCA_003730295.1", "taxid": 2293253, "species_taxid": 2293253, "relation_to_type": "type", "validated": true, "ani": 77.2376, "matched_fragments": 99, "total_fragments": 1357, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentibacillus halodurans", "strain": "strain=CGMCC 1.3702", "accession": 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