{
    "type": "genome",
    "identifier": "GCF_002217195.1",
    "organism": "Flavobacterium aquidurense",
    "title": "Flavobacterium aquidurense",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "FDA",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002217195.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06049052",
        "wgs_master": "MUGR00000000.1",
        "refseq_category": "reference genome",
        "taxid": "362413",
        "species_taxid": "362413",
        "organism_name": "Flavobacterium aquidurense",
        "infraspecific_name": "strain=DSM 18293",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/07/12",
        "asm_name": "ASM221719v1",
        "asm_submitter": "FDA",
        "gbrs_paired_asm": "GCA_002217195.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/217/195/GCF_002217195.1_ASM221719v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5724426",
        "genome_size_ungapped": "5723962",
        "gc_percent": "34.500000",
        "replicon_count": "0",
        "scaffold_count": "88",
        "contig_count": "88",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002217195.1-RS_2024_10_23",
        "annotation_date": "2024-10-23",
        "total_gene_count": "4932",
        "protein_coding_gene_count": "4835",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-07-12",
    "dateModified": "2017-07-12",
    "datePublished": "2017-07-12",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Flavobacterium aquidurense"
        ],
        "sample_taxid": [
            "362413"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Germany:Westhofer Bach"
        ],
        "sample_host_location_id": [],
        "data_size": "1.606 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5724426",
        "Number of Sequences": "88",
        "Longest Sequences (bp)": "316578",
        "N50 (bp)": "135085",
        "Gap Ratio (%)": "0.008560",
        "GCcontent (%)": "34.7",
        "Number of CDSs": "4814",
        "Average Protein Length": "339.0",
        "Coding Ratio (%)": "85.5",
        "Number of rRNAs": "2",
        "Number of tRNAs": "52",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Flavobacterium aquidurense",
                "strain": "strain=DSM 18293",
                "accession": "GCA_002217195.1",
                "taxid": 362413,
                "species_taxid": 362413,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1863,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Flavobacterium piscis",
                "strain": "strain=CCUG 60099",
                "accession": "GCA_001686925.1",
                "taxid": 1114874,
                "species_taxid": 1114874,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8626,
                "matched_fragments": 1309,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium piscis",
                "strain": "strain=CCUG 60099",
                "accession": "GCA_002222045.1",
                "taxid": 1114874,
                "species_taxid": 1114874,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.8578,
                "matched_fragments": 1261,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium bizetiae",
                "strain": "strain=CIP 105534",
                "accession": "GCA_902804475.1",
                "taxid": 2704140,
                "species_taxid": 2704140,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.1171,
                "matched_fragments": 1273,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium bizetiae",
                "strain": "strain=CIP 105534",
                "accession": "GCA_904425415.1",
                "taxid": 2704140,
                "species_taxid": 2704140,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.0768,
                "matched_fragments": 1319,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium psychroterrae",
                "strain": "strain=CCM 8827",
                "accession": "GCA_018380615.1",
                "taxid": 2133767,
                "species_taxid": 2133767,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.4357,
                "matched_fragments": 1230,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium araucananum",
                "strain": "strain=DSM 24704",
                "accession": "GCA_002222055.1",
                "taxid": 946678,
                "species_taxid": 946678,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2577,
                "matched_fragments": 1178,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium araucananum",
                "strain": "strain=DSM 24704",
                "accession": "GCA_003148525.1",
                "taxid": 946678,
                "species_taxid": 946678,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2242,
                "matched_fragments": 1195,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium frigidimaris",
                "strain": "strain=DSM 15937",
                "accession": "GCA_002217275.1",
                "taxid": 262320,
                "species_taxid": 262320,
                "relation_to_type": "type",
                "validated": true,
                "ani": 83.3516,
                "matched_fragments": 1113,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium soyae",
                "strain": "strain=SCIV07",
                "accession": "GCA_021245985.1",
                "taxid": 2903098,
                "species_taxid": 2903098,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.6619,
                "matched_fragments": 1021,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium tyrosinilyticum",
                "strain": "strain=KCTC 42726",
                "accession": "GCA_023656565.1",
                "taxid": 1658740,
                "species_taxid": 1658740,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5339,
                "matched_fragments": 997,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium panacis",
                "strain": "strain=DCY106",
                "accession": "GCA_024649945.1",
                "taxid": 2962567,
                "species_taxid": 2962567,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.5147,
                "matched_fragments": 1027,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium endoglycinae",
                "strain": "strain=BB8",
                "accession": "GCA_017352115.1",
                "taxid": 2816357,
                "species_taxid": 2816357,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.3974,
                "matched_fragments": 985,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Flavobacterium davisii",
                "strain": "strain=90-106",
                "accession": "GCA_019565505.1",
                "taxid": 2906077,
                "species_taxid": 2906077,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.9525,
                "matched_fragments": 138,
                "total_fragments": 1869,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCA_900129595.1",
                "gtdb_species": "s__Flavobacterium frigidimaris",
                "ani": 99.9935,
                "matched_fragments": 1863,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "conclusive"
            },
            {
                "accession": "GCF_001686925.1",
                "gtdb_species": "s__Flavobacterium piscis",
                "ani": 86.8722,
                "matched_fragments": 1308,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.33",
                "min_intra_species_ani": "97.30",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.88",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_009664855.1",
                "gtdb_species": "s__Flavobacterium sp009664855",
                "ani": 86.7295,
                "matched_fragments": 1330,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.90",
                "min_intra_species_ani": "98.90",
                "mean_intra_species_af": "0.89",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_902804475.1",
                "gtdb_species": "s__Flavobacterium bizetiae",
                "ani": 86.1142,
                "matched_fragments": 1274,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.96",
                "min_intra_species_ani": "99.94",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_001422725.1",
                "gtdb_species": "s__Flavobacterium sp001422725",
                "ani": 85.8454,
                "matched_fragments": 1269,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001404985.1",
                "gtdb_species": "s__Flavobacterium aquidurense_B",
                "ani": 85.6622,
                "matched_fragments": 1245,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001975985.1",
                "gtdb_species": "s__Flavobacterium sp001975985",
                "ani": 85.6052,
                "matched_fragments": 1269,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018380615.1",
                "gtdb_species": "s__Flavobacterium psychroterrae",
                "ani": 85.4511,
                "matched_fragments": 1229,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002222055.1",
                "gtdb_species": "s__Flavobacterium araucananum",
                "ani": 85.2559,
                "matched_fragments": 1178,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "0.99",
                "min_intra_species_af": "0.99",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_006438875.1",
                "gtdb_species": "s__Flavobacterium pectinovorum_A",
                "ani": 84.5497,
                "matched_fragments": 1205,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002754195.1",
                "gtdb_species": "s__Flavobacterium sp002754195",
                "ani": 84.4793,
                "matched_fragments": 1231,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_004339525.1",
                "gtdb_species": "s__Flavobacterium sp004339525",
                "ani": 84.4569,
                "matched_fragments": 1242,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCA_900107365.1",
                "gtdb_species": "s__Flavobacterium aquidurense",
                "ani": 83.281,
                "matched_fragments": 1120,
                "total_fragments": 1869,
                "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.99",
                "min_intra_species_ani": "99.99",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.046,
        "cell_length": 0.447,
        "doubling_h": 1.271,
        "growth_tmp": 25.0,
        "optimum_tmp": 23.5,
        "optimum_ph": 6.4,
        "genome_size": 5395055.5,
        "gc_content": 34.893,
        "coding_genes": 3154.048,
        "rRNA16S_genes": 5.145,
        "tRNA_genes": 58.611,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.333,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.789,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.21,
        "bacillus_cell_shape": 1.0,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Flavobacterium",
        "aquidurense"
    ],
    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}