{ "type": "genome", "identifier": "GCF_002217335.1", "organism": "Flavobacterium hydatis", "title": "Flavobacterium hydatis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "FDA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002217335.1", "bioproject": "PRJNA224116", "biosample": "SAMN06049047", "wgs_master": "MUGY00000000.1", "refseq_category": "reference genome", "taxid": "991", "species_taxid": "991", "organism_name": "Flavobacterium hydatis", "infraspecific_name": "strain=ATCC 29551", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/12", "asm_name": "ASM221733v1", "asm_submitter": "FDA", "gbrs_paired_asm": "GCA_002217335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/217/335/GCF_002217335.1_ASM221733v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5902573", "genome_size_ungapped": "5902061", "gc_percent": "32.500000", "replicon_count": "0", "scaffold_count": "72", "contig_count": "72", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002217335.1-RS_2024_04_15", "annotation_date": "2024-04-15", "total_gene_count": "5060", "protein_coding_gene_count": "4962", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-12", "dateModified": "2017-07-12", "datePublished": "2017-07-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium hydatis" ], "sample_taxid": [ "991" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:hatchery in Michigan" ], "sample_host_location_id": [], "data_size": "1.642 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5902573", "Number of Sequences": "72", "Longest Sequences (bp)": "877782", "N50 (bp)": "222010", "Gap Ratio (%)": "0.009487", "GCcontent (%)": "32.7", "Number of CDSs": "4958", "Average Protein Length": "338.8", "Coding Ratio (%)": "85.4", "Number of rRNAs": "3", "Number of tRNAs": "67", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium hydatis", "strain": "strain=ATCC 29551", "accession": "GCA_002217335.1", "taxid": 991, "species_taxid": 991, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1932, "total_fragments": 1934, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium hydatis", "strain": "strain=DSM 2063", "accession": "GCA_000737695.1", "taxid": 991, "species_taxid": 991, "relation_to_type": "type", "validated": true, "ani": 99.9659, "matched_fragments": 1879, "total_fragments": 1934, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_904425415.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 81.1607, "matched_fragments": 901, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_902804475.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 81.0575, "matched_fragments": 896, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium araucananum", "strain": "strain=DSM 24704", "accession": "GCA_002222055.1", "taxid": 946678, "species_taxid": 946678, "relation_to_type": "type", "validated": true, "ani": 80.8854, "matched_fragments": 865, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=DSM 12611", "accession": "GCA_000832125.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 80.8852, "matched_fragments": 876, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=ATCC 51468", "accession": "GCA_002217315.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 80.8792, "matched_fragments": 869, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=NCTC13514", "accession": "GCA_900450525.1", 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"relation_to_type": "type", "validated": true, "ani": 80.5151, "matched_fragments": 844, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium pectinovorum", "strain": "strain=DSM 6368", "accession": "GCA_900142715.1", "taxid": 29533, "species_taxid": 29533, "relation_to_type": "type", "validated": true, "ani": 80.463, "matched_fragments": 838, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium plurextorum", "strain": "strain=CCUG 60112", "accession": "GCA_002217395.1", "taxid": 1114867, "species_taxid": 1114867, "relation_to_type": "type", "validated": true, "ani": 80.3268, "matched_fragments": 824, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, 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"total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium foetidum", "strain": "strain=JCM 32085", "accession": "GCA_004634245.1", "taxid": 2026681, "species_taxid": 2026681, "relation_to_type": "type", "validated": true, "ani": 79.1034, "matched_fragments": 615, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium oreochromis", "strain": "strain=Costa Rica 04-02-TN", "accession": "GCA_019565455.1", "taxid": 2906078, "species_taxid": 2906078, "relation_to_type": "type", "validated": true, "ani": 76.9055, "matched_fragments": 173, "total_fragments": 1934, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_000737695.1", "gtdb_species": "s__Flavobacterium hydatis", "ani": 99.9659, "matched_fragments": 1879, "total_fragments": 1934, "gtdb_taxonomy": 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