{ "type": "genome", "identifier": "GCF_002217355.1", "organism": "Flavobacterium oncorhynchi", "title": "Flavobacterium oncorhynchi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "FDA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002217355.1", "bioproject": "PRJNA224116", "biosample": "SAMN06049060", "wgs_master": "MUHA00000000.1", "refseq_category": "reference genome", "taxid": "728056", "species_taxid": "728056", "organism_name": "Flavobacterium oncorhynchi", "infraspecific_name": "strain=CCUG 59446", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/12", "asm_name": "ASM221735v1", "asm_submitter": "FDA", "gbrs_paired_asm": "GCA_002217355.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/217/355/GCF_002217355.1_ASM221735v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4730796", "genome_size_ungapped": "4730500", "gc_percent": "33.500000", "replicon_count": "0", "scaffold_count": "52", "contig_count": "52", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002217355.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "4060", "protein_coding_gene_count": "3984", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-12", "dateModified": "2017-07-12", "datePublished": "2017-07-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium oncorhynchi" ], "sample_taxid": [ "728056" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain" ], 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"matched_fragments": 858, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquicola", "strain": "strain=DSM 100880", "accession": "GCA_003385115.1", "taxid": 1682742, "species_taxid": 1682742, "relation_to_type": "type", "validated": true, "ani": 78.8709, "matched_fragments": 461, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 77.3172, "matched_fragments": 171, "total_fragments": 1551, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002217355.1", "gtdb_species": "s__Flavobacterium oncorhynchi", "ani": 100.0, "matched_fragments": 1550, "total_fragments": 1551, 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