{ "type": "genome", "identifier": "GCF_002217405.1", "organism": "Flavobacterium psychrophilum DSM 3660 = ATCC 49418", "title": "Flavobacterium psychrophilum DSM 3660 = ATCC 49418", "description": "na", "data type": "Genome sequencing and assembly", "organization": "FDA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002217405.1", "bioproject": "PRJNA224116", "biosample": "SAMN06049063", "wgs_master": "MUHE00000000.1", "refseq_category": "na", "taxid": "1121894", "species_taxid": "96345", "organism_name": "Flavobacterium psychrophilum DSM 3660 = ATCC 49418", "infraspecific_name": "strain=ATCC 49418", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/12", "asm_name": "ASM221740v1", "asm_submitter": "FDA", "gbrs_paired_asm": "GCA_002217405.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/217/405/GCF_002217405.1_ASM221740v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2638051", "genome_size_ungapped": "2635500", "gc_percent": "32.500000", "replicon_count": "0", "scaffold_count": "83", "contig_count": "83", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002217405.1-RS_2024_10_25", "annotation_date": "2024-10-25", "total_gene_count": "2377", "protein_coding_gene_count": "2319", "non_coding_gene_count": "45", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-12", "dateModified": "2017-07-12", "datePublished": "2017-07-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium psychrophilum DSM 3660 = ATCC 49418" ], "sample_taxid": [ "1121894" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:WA" ], "sample_host_location_id": [], "data_size": "0.734 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2638051", "Number of Sequences": "83", "Longest Sequences (bp)": "258714", "N50 (bp)": "73660", "Gap Ratio (%)": "0.097079", "GCcontent (%)": "32.5", "Number of CDSs": "2296", "Average Protein Length": "330.5", "Coding Ratio (%)": "86.3", "Number of rRNAs": "2", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=ATCC 49418", "accession": "GCA_002217405.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 832, "total_fragments": 837, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=FPG3", "accession": "GCA_000754405.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 99.9829, "matched_fragments": 837, "total_fragments": 837, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium psychrophilum", "strain": "strain=DSM 3660", "accession": "GCA_900101925.1", "taxid": 96345, "species_taxid": 96345, "relation_to_type": "type", "validated": true, "ani": 99.9639, "matched_fragments": 827, "total_fragments": 837, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium swingsii", "strain": "strain=DSM 21789", "accession": "GCA_900111965.1", "taxid": 498292, "species_taxid": 498292, "relation_to_type": "type", "validated": true, "ani": 85.6414, "matched_fragments": 618, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium gawalongense", "strain": "strain=GSP16", "accession": "GCA_007097265.1", "taxid": 2594432, "species_taxid": 2594432, "relation_to_type": "type", "validated": true, "ani": 78.0954, "matched_fragments": 239, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium luteum", "strain": "strain=NBRC 112527", "accession": "GCA_008806775.1", "taxid": 2026654, "species_taxid": 2026654, "relation_to_type": "type", "validated": true, "ani": 77.9726, "matched_fragments": 239, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium geliluteum", "strain": "strain=P7388", "accession": "GCA_017948595.1", "taxid": 2816120, "species_taxid": 2816120, "relation_to_type": "type", "validated": true, "ani": 77.8832, "matched_fragments": 234, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium tyrosinilyticum", "strain": "strain=KCTC 42726", "accession": "GCA_023656565.1", "taxid": 1658740, "species_taxid": 1658740, "relation_to_type": "type", "validated": true, "ani": 77.8645, "matched_fragments": 199, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=ATCC 51468", "accession": "GCA_002217315.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 77.8061, "matched_fragments": 256, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium macrobrachii", "strain": "strain=an-8", "accession": "GCA_014486675.1", "taxid": 591204, "species_taxid": 591204, "relation_to_type": "type", "validated": true, "ani": 77.602, "matched_fragments": 239, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium soyae", "strain": "strain=SCIV07", "accession": "GCA_021245985.1", "taxid": 2903098, "species_taxid": 2903098, "relation_to_type": "type", "validated": true, "ani": 77.5778, "matched_fragments": 210, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium solisilvae", "strain": "strain=SE-s27", "accession": "GCA_012911605.1", "taxid": 1852019, "species_taxid": 1852019, "relation_to_type": "type", "validated": true, "ani": 77.5447, "matched_fragments": 239, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium davisii", "strain": "strain=90-106", "accession": "GCA_019565505.1", "taxid": 2906077, "species_taxid": 2906077, "relation_to_type": "type", "validated": true, "ani": 77.3084, "matched_fragments": 164, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aureibaculum flavum", "strain": "strain=A20", "accession": "GCA_016406085.1", "taxid": 2795986, "species_taxid": 2795986, "relation_to_type": "type", "validated": true, "ani": 76.1168, "matched_fragments": 62, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algibacter pacificus", "strain": "strain=H164", "accession": "GCA_008033385.1", "taxid": 2599389, "species_taxid": 2599389, "relation_to_type": "type", "validated": true, "ani": 75.6892, "matched_fragments": 101, "total_fragments": 837, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002217405.1", "gtdb_species": "s__Flavobacterium psychrophilum", "ani": 100.0, "matched_fragments": 832, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "98.91", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.83", "num_clustered_genomes": 157, "status": "conclusive" }, { "accession": "GCF_900111965.1", "gtdb_species": "s__Flavobacterium swingsii", "ani": 85.6405, "matched_fragments": 618, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_007097365.1", "gtdb_species": "s__Flavobacterium franklandianum", "ani": 78.5773, "matched_fragments": 227, "total_fragments": 837, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.99", "min_intra_species_ani": "98.99", 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