{
    "type": "genome",
    "identifier": "GCF_002217925.1",
    "organism": "Secundilactobacillus mixtipabuli",
    "title": "Secundilactobacillus mixtipabuli",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "NARO Institute of Livestock and Grassland Science",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002217925.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMD00042395",
        "wgs_master": "BCMF00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1435342",
        "species_taxid": "1435342",
        "organism_name": "Secundilactobacillus mixtipabuli",
        "infraspecific_name": "strain=IWT30",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Scaffold",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/06/14",
        "asm_name": "ASM221792v1",
        "asm_submitter": "NARO Institute of Livestock and Grassland Science",
        "gbrs_paired_asm": "GCA_002217925.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/217/925/GCF_002217925.1_ASM221792v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "2511119",
        "genome_size_ungapped": "2510989",
        "gc_percent": "43.500000",
        "replicon_count": "0",
        "scaffold_count": "87",
        "contig_count": "87",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002217925.1-RS_2024_08_12",
        "annotation_date": "2024-08-12",
        "total_gene_count": "2430",
        "protein_coding_gene_count": "2289",
        "non_coding_gene_count": "106",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-06-14",
    "dateModified": "2017-06-14",
    "datePublished": "2017-06-14",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Secundilactobacillus mixtipabuli"
        ],
        "sample_taxid": [
            "1435342"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Japan:Iwate"
        ],
        "sample_host_location_id": [],
        "data_size": "0.715 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "2511119",
        "Number of Sequences": "87",
        "Longest Sequences (bp)": "314740",
        "N50 (bp)": "254329",
        "Gap Ratio (%)": "0.005177",
        "GCcontent (%)": "43.7",
        "Number of CDSs": "2328",
        "Average Protein Length": "307.1",
        "Coding Ratio (%)": "85.4",
        "Number of rRNAs": "5",
        "Number of tRNAs": "63",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Secundilactobacillus mixtipabuli",
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                "relation_to_type": "type",
                "validated": true,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Secundilactobacillus yichangensis",
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                "taxid": 2799580,
                "species_taxid": 2799580,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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                "validated": true,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus angelensis",
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                "species_taxid": 2722706,
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                "ani_threshold": 95,
                "status": "below_threshold"
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                "species_taxid": 1714682,
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                "validated": true,
                "ani": 82.5932,
                "matched_fragments": 495,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus silagei",
                "strain": "strain=DSM 27022",
                "accession": "GCA_004354595.1",
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                "species_taxid": 1293415,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Secundilactobacillus silagei",
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            },
            {
                "organism_name": "Secundilactobacillus silagei",
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            },
            {
                "organism_name": "Lentilactobacillus parakefiri",
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                "accession": "GCA_004354625.1",
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                "species_taxid": 152332,
                "relation_to_type": "type",
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            },
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            {
                "organism_name": "Secundilactobacillus oryzae",
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                "status": "below_threshold"
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            {
                "organism_name": "Lentilactobacillus otakiensis",
                "strain": "strain=DSM 19908",
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                "species_taxid": 481720,
                "relation_to_type": "type",
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                "status": "below_threshold"
            },
            {
                "organism_name": "Lentilactobacillus otakiensis",
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            },
            {
                "organism_name": "Lentilactobacillus otakiensis",
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            },
            {
                "organism_name": "Lentilactobacillus kosonis",
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                "accession": "GCA_003864335.1",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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    "_genome_taxon": [
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}