{ "type": "genome", "identifier": "GCF_002222045.1", "organism": "Flavobacterium piscis", "title": "Flavobacterium piscis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "FDA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002222045.1", "bioproject": "PRJNA224116", "biosample": "SAMN06049066", "wgs_master": "MUHC00000000.1", "refseq_category": "na", "taxid": "1114874", "species_taxid": "1114874", "organism_name": "Flavobacterium piscis", "infraspecific_name": "strain=CCUG 60099", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/20", "asm_name": "ASM222204v1", "asm_submitter": "FDA", "gbrs_paired_asm": "GCA_002222045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/222/045/GCF_002222045.1_ASM222204v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5880206", "genome_size_ungapped": "5876292", "gc_percent": "34.000000", "replicon_count": "0", "scaffold_count": "105", "contig_count": "105", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002222045.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "5026", "protein_coding_gene_count": "4922", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-20", "dateModified": "2017-07-20", "datePublished": "2017-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium piscis" ], "sample_taxid": [ "1114874" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Spain:fish farm" ], "sample_host_location_id": [], "data_size": "1.644 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5880206", "Number of Sequences": "105", "Longest Sequences (bp)": "405634", "N50 (bp)": "111851", "Gap Ratio (%)": "0.067055", "GCcontent (%)": "34.1", "Number of CDSs": "4897", "Average Protein Length": "340.8", "Coding Ratio (%)": "85.2", "Number of rRNAs": "5", "Number of tRNAs": "52", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_002222045.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1901, "total_fragments": 1907, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_001686925.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 99.9859, "matched_fragments": 1896, "total_fragments": 1907, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_904425415.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 87.9696, "matched_fragments": 1457, "total_fragments": 1907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium bizetiae", "strain": "strain=CIP 105534", "accession": "GCA_902804475.1", "taxid": 2704140, "species_taxid": 2704140, "relation_to_type": "type", "validated": true, "ani": 87.9638, "matched_fragments": 1418, "total_fragments": 1907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquidurense", "strain": "strain=DSM 18293", "accession": "GCA_002217195.1", "taxid": 362413, "species_taxid": 362413, "relation_to_type": "type", "validated": true, "ani": 86.7707, "matched_fragments": 1277, "total_fragments": 1907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychroterrae", "strain": "strain=CCM 8827", "accession": "GCA_018380615.1", "taxid": 2133767, "species_taxid": 2133767, "relation_to_type": "type", "validated": true, "ani": 85.5488, "matched_fragments": 1257, "total_fragments": 1907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=NCTC13514", "accession": "GCA_900450525.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 84.4655, "matched_fragments": 1135, "total_fragments": 1907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=ATCC 51468", "accession": 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99.9859, "matched_fragments": 1896, "total_fragments": 1907, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.33", "min_intra_species_ani": "97.30", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.88", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_009664855.1", "gtdb_species": "s__Flavobacterium sp009664855", "ani": 89.6773, "matched_fragments": 1512, "total_fragments": 1907, "gtdb_taxonomy": "d__Bacteria;p__Bacteroidota;c__Bacteroidia;o__Flavobacteriales;f__Flavobacteriaceae;g__Flavobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.90", "min_intra_species_ani": "98.90", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.89", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_902804475.1", "gtdb_species": "s__Flavobacterium bizetiae", "ani": 87.9737, 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