{ "type": "genome", "identifier": "GCF_002222055.1", "organism": "Flavobacterium araucananum", "title": "Flavobacterium araucananum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "FDA", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002222055.1", "bioproject": "PRJNA224116", "biosample": "SAMN06049049", "wgs_master": "MUGS00000000.1", "refseq_category": "na", "taxid": "946678", "species_taxid": "946678", "organism_name": "Flavobacterium araucananum", "infraspecific_name": "strain=DSM 24704", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/20", "asm_name": "ASM222205v1", "asm_submitter": "FDA", "gbrs_paired_asm": "GCA_002222055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/222/055/GCF_002222055.1_ASM222205v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5896739", "genome_size_ungapped": "5896116", "gc_percent": "34.500000", "replicon_count": "0", "scaffold_count": "139", "contig_count": "139", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002222055.1-RS_2024_10_23", "annotation_date": "2024-10-23", "total_gene_count": "4965", "protein_coding_gene_count": "4855", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-20", "dateModified": "2017-07-20", "datePublished": "2017-07-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium araucananum" ], "sample_taxid": [ "946678" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Chile:Concepcion" ], "sample_host_location_id": [], "data_size": "1.648 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5896739", "Number of Sequences": "139", "Longest Sequences (bp)": "492877", "N50 (bp)": "119563", "Gap Ratio (%)": "0.011718", "GCcontent (%)": "34.4", "Number of CDSs": "4808", "Average Protein Length": "347.2", "Coding Ratio (%)": "84.9", "Number of rRNAs": "1", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium araucananum", "strain": "strain=DSM 24704", "accession": "GCA_002222055.1", "taxid": 946678, "species_taxid": 946678, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1893, "total_fragments": 1897, "ani_threshold": 95, "status": "conclusive" }, { 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"strain": "strain=CCUG 60099", "accession": "GCA_001686925.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 85.3479, "matched_fragments": 1209, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium psychroterrae", "strain": "strain=CCM 8827", "accession": "GCA_018380615.1", "taxid": 2133767, "species_taxid": 2133767, "relation_to_type": "type", "validated": true, "ani": 85.3195, "matched_fragments": 1276, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium piscis", "strain": "strain=CCUG 60099", "accession": "GCA_002222045.1", "taxid": 1114874, "species_taxid": 1114874, "relation_to_type": "type", "validated": true, "ani": 85.2537, "matched_fragments": 1203, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium aquidurense", "strain": "strain=DSM 18293", "accession": "GCA_002217195.1", "taxid": 362413, "species_taxid": 362413, "relation_to_type": "type", "validated": true, "ani": 85.2318, "matched_fragments": 1177, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=NCTC13514", "accession": "GCA_900450525.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 84.3083, "matched_fragments": 1112, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium hibernum", "strain": "strain=ATCC 51468", "accession": "GCA_002217315.1", "taxid": 37752, "species_taxid": 37752, "relation_to_type": "type", "validated": true, "ani": 84.2941, "matched_fragments": 1117, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium frigidimaris", "strain": "strain=DSM 15937", "accession": "GCA_002217275.1", "taxid": 262320, 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"type", "validated": true, "ani": 81.201, "matched_fragments": 1014, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium panacis", "strain": "strain=DCY106", "accession": "GCA_024649945.1", "taxid": 2962567, "species_taxid": 2962567, "relation_to_type": "type", "validated": true, "ani": 81.1242, "matched_fragments": 938, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium proteolyticum", "strain": "strain=1Y8A", "accession": "GCA_015223105.1", "taxid": 2911683, "species_taxid": 2911683, "relation_to_type": "type", "validated": true, "ani": 77.3753, "matched_fragments": 197, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myroides albus", "strain": "strain=BIT-d1", "accession": "GCA_009711045.1", "taxid": 2562892, "species_taxid": 2562892, "relation_to_type": "type", "validated": true, "ani": 77.1323, "matched_fragments": 78, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=ATCC 35035", "accession": "GCA_002217205.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 77.0172, "matched_fragments": 188, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium branchiophilum", "strain": "strain=DSM 24789", "accession": "GCA_006716585.1", "taxid": 55197, "species_taxid": 55197, "relation_to_type": "type", "validated": true, "ani": 76.9872, "matched_fragments": 201, "total_fragments": 1897, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Myroides profundi", "strain": "strain=D25", "accession": "GCA_000833025.1", "taxid": 480520, "species_taxid": 480520, "relation_to_type": "type", "validated": true, "ani": 76.9421, "matched_fragments": 77, "total_fragments": 1897, 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