{ "type": "genome", "identifier": "GCF_002224265.1", "organism": "Vibrio vulnificus NBRC 15645 = ATCC 27562", "title": "Vibrio vulnificus NBRC 15645 = ATCC 27562", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Center for Genomics and Bioinformatics", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002224265.1", "bioproject": "PRJNA224116", "biosample": "SAMN04097182", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1219061", "species_taxid": "672", "organism_name": "Vibrio vulnificus NBRC 15645 = ATCC 27562", "infraspecific_name": "strain=ATCC 27562", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/24", "asm_name": "ASM222426v1", "asm_submitter": "Center for Genomics and Bioinformatics", "gbrs_paired_asm": "GCA_002224265.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/224/265/GCF_002224265.1_ASM222426v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5007160", "genome_size_ungapped": "5007160", "gc_percent": "46.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-03-05", "total_gene_count": "4523", "protein_coding_gene_count": "4294", "non_coding_gene_count": "152", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-24", "dateModified": "2017-07-24", "datePublished": "2017-07-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Vibrio vulnificus NBRC 15645 = ATCC 27562" ], "sample_taxid": [ "1219061" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.407 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5007160", "Number of Sequences": "2", "Longest Sequences (bp)": "3266118", "N50 (bp)": "3266118", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.7", "Number of CDSs": "4275", "Average Protein Length": "334.9", "Coding Ratio (%)": "85.8", "Number of rRNAs": "34", "Number of tRNAs": "115", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Vibrio vulnificus", "strain": "strain=ATCC 27562", "accession": "GCA_002224265.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1661, "total_fragments": 1668, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=NCTC13647", "accession": "GCA_900460565.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "type", "validated": true, "ani": 99.9914, "matched_fragments": 1653, "total_fragments": 1668, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=ATCC 27562", "accession": "GCA_000299635.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "suspected-type", "validated": true, "ani": 99.9628, "matched_fragments": 1375, "total_fragments": 1668, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio vulnificus", "strain": "strain=NBRC 15645", "accession": "GCA_001591065.1", "taxid": 672, "species_taxid": 672, "relation_to_type": "type", "validated": true, "ani": 99.9447, "matched_fragments": 1560, "total_fragments": 1668, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Vibrio cidicii", "strain": "strain=2756-81", "accession": "GCA_009763805.1", "taxid": 1763883, "species_taxid": 1763883, "relation_to_type": "type", "validated": true, "ani": 81.9639, "matched_fragments": 759, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio navarrensis", "strain": "strain=ATCC 51183", "accession": "GCA_000764325.1", "taxid": 29495, "species_taxid": 29495, "relation_to_type": "type", "validated": true, "ani": 81.3516, "matched_fragments": 731, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio owensii", "strain": "strain=DY05", "accession": "GCA_000817815.1", "taxid": 696485, "species_taxid": 696485, "relation_to_type": "type", "validated": true, "ani": 80.4164, "matched_fragments": 588, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=JCM 19500", "accession": "GCA_009938205.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 80.288, "matched_fragments": 378, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio panuliri", "strain": "strain=LBS 2", "accession": "GCA_008830195.1", "taxid": 1381081, "species_taxid": 1381081, "relation_to_type": "type", "validated": true, "ani": 80.1341, "matched_fragments": 367, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio fortis", "strain": "strain=LMG 21557", "accession": "GCA_024347475.1", "taxid": 212667, "species_taxid": 212667, "relation_to_type": "type", "validated": true, "ani": 79.8554, "matched_fragments": 414, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vibrio furnissii", "strain": "strain=PartQ-Vfurnissii-RM8376", "accession": "GCA_022869905.1", "taxid": 29494, "species_taxid": 29494, "relation_to_type": "type", "validated": true, "ani": 79.5304, "matched_fragments": 464, "total_fragments": 1668, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002224265.1", "gtdb_species": "s__Vibrio vulnificus", "ani": 100.0, "matched_fragments": 1659, "total_fragments": 1668, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Vibrionaceae;g__Vibrio", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.11", "min_intra_species_ani": "95.22", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.85", "num_clustered_genomes": 225, "status": "conclusive" }, { "accession": "GCF_013369385.1", "gtdb_species": "s__Vibrio sp013369385", "ani": 91.8906, "matched_fragments": 1176, 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