{ "type": "genome", "identifier": "GCF_002234575.2", "organism": "Enterocloster bolteae", "title": "Enterocloster bolteae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of North Carolina at Chapel Hill", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002234575.2", "bioproject": "PRJNA224116", "biosample": "SAMN07340702", "wgs_master": "na", "refseq_category": "na", "taxid": "208479", "species_taxid": "208479", "organism_name": "Enterocloster bolteae", "infraspecific_name": "strain=ATCC BAA-613", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/30", "asm_name": "ASM223457v2", "asm_submitter": "University of North Carolina at Chapel Hill", "gbrs_paired_asm": "GCA_002234575.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/234/575/GCF_002234575.2_ASM223457v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6614036", "genome_size_ungapped": "6614036", "gc_percent": "49.000000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-02-28", "total_gene_count": "6116", "protein_coding_gene_count": "5942", "non_coding_gene_count": "94", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-30", "dateModified": "2017-08-30", "datePublished": "2017-08-30", "_annotation": { "sample_count": 1, "sample_organism": [ "Enterocloster bolteae" ], "sample_taxid": [ "208479" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.864 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6614036", "Number of Sequences": "2", "Longest Sequences (bp)": "6570176", "N50 (bp)": "6570176", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.0", "Number of CDSs": "6134", "Average Protein Length": "318.7", "Coding Ratio (%)": "88.7", "Number of rRNAs": "10", "Number of tRNAs": "75", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002234575.2", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2204, "total_fragments": 2204, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_002959675.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 99.9938, "matched_fragments": 2203, "total_fragments": 2204, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterocloster bolteae", "strain": "strain=ATCC BAA-613", "accession": "GCA_000154365.1", "taxid": 208479, "species_taxid": 208479, "relation_to_type": "type", "validated": true, "ani": 99.9676, "matched_fragments": 2142, "total_fragments": 2204, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=ATCC 25537", "accession": "GCA_900113155.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "type", "validated": true, "ani": 91.3169, "matched_fragments": 1226, "total_fragments": 2204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=FDAARGOS_1529", "accession": "GCA_020297485.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 91.2391, "matched_fragments": 1249, "total_fragments": 2204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster clostridioformis", "strain": "strain=NCTC11224", "accession": "GCA_900447015.1", "taxid": 1531, "species_taxid": 1531, "relation_to_type": "suspected-type", "validated": true, "ani": 91.1928, "matched_fragments": 1248, "total_fragments": 2204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella massiliensis", "strain": "strain=AT11", "accession": "GCA_900243045.1", "taxid": 1720294, "species_taxid": 1720294, "relation_to_type": "type", "validated": true, "ani": 85.0299, "matched_fragments": 179, "total_fragments": 2204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hungatella hathewayi", "strain": "strain=DSM 13479", "accession": "GCA_025149285.1", "taxid": 154046, "species_taxid": 154046, "relation_to_type": "suspected-type", "validated": true, "ani": 80.5276, "matched_fragments": 250, "total_fragments": 2204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Eisenbergiella porci", "strain": "strain=WCA-389-WT-23B", "accession": "GCA_009696275.1", "taxid": 2652274, "species_taxid": 2652274, "relation_to_type": "type", "validated": true, "ani": 80.0203, "matched_fragments": 139, "total_fragments": 2204, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterocloster asparagiformis", "strain": "strain=DSM 15981", "accession": "GCA_025149125.1", "taxid": 333367, "species_taxid": 333367, "relation_to_type": "type", "validated": true, "ani": 78.1233, "matched_fragments": 431, "total_fragments": 2204, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002234575.2", "gtdb_species": "s__Enterocloster bolteae", "ani": 100.0, "matched_fragments": 2204, "total_fragments": 2204, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.46", "min_intra_species_ani": "96.97", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.78", "num_clustered_genomes": 35, "status": "conclusive" }, { "accession": "GCF_000424325.1", "gtdb_species": "s__Enterocloster clostridioformis_A", "ani": 91.7077, "matched_fragments": 1050, "total_fragments": 2204, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.02", "min_intra_species_ani": "99.02", "mean_intra_species_af": 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"0.86", "num_clustered_genomes": 6, "status": "-" }, { "accession": "GCA_000155435.1", "gtdb_species": "s__Enterocloster sp000155435", "ani": 81.3831, "matched_fragments": 790, "total_fragments": 2204, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.08", "min_intra_species_ani": "98.70", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.83", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_003434055.1", "gtdb_species": "s__Enterocloster aldenensis", "ani": 80.6676, "matched_fragments": 765, "total_fragments": 2204, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.16", "min_intra_species_ani": "97.51", "mean_intra_species_af": "0.89", "min_intra_species_af": "0.78", "num_clustered_genomes": 13, "status": "-" }, { "accession": "GCF_000233455.1", "gtdb_species": "s__Enterocloster citroniae", "ani": 80.5954, "matched_fragments": 764, "total_fragments": 2204, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.23", "min_intra_species_ani": "99.13", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 10, "status": "-" }, { "accession": "GCA_900547035.1", "gtdb_species": "s__Enterocloster excrementigallinarum", "ani": 77.7034, "matched_fragments": 223, "total_fragments": 2204, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes_A;c__Clostridia;o__Lachnospirales;f__Lachnospiraceae;g__Enterocloster", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.35", "min_intra_species_ani": "98.28", "mean_intra_species_af": "0.80", "min_intra_species_af": "0.77", "num_clustered_genomes": 6, "status": "-" } ] }, 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