{ "type": "genome", "identifier": "GCF_002234615.1", "organism": "Paenibacillus rigui", "title": "Paenibacillus rigui", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Institute of Microbial Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002234615.1", "bioproject": "PRJNA224116", "biosample": "SAMN07334579", "wgs_master": "NMQW00000000.1", "refseq_category": "reference genome", "taxid": "554312", "species_taxid": "554312", "organism_name": "Paenibacillus rigui", "infraspecific_name": "strain=JCM 16352", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/27", "asm_name": "ASM223461v1", "asm_submitter": "Institute of Microbial Technology", "gbrs_paired_asm": "GCA_002234615.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/234/615/GCF_002234615.1_ASM223461v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7172832", "genome_size_ungapped": "7172832", "gc_percent": "50.500000", "replicon_count": "0", "scaffold_count": "106", "contig_count": "106", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002234615.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "6385", "protein_coding_gene_count": "6194", "non_coding_gene_count": "98", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-27", "dateModified": "2017-07-27", "datePublished": "2017-07-27", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus rigui" ], "sample_taxid": [ "554312" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "NA" ], "sample_host_location_id": [], "data_size": "2.052 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7172832", "Number of Sequences": "106", "Longest Sequences (bp)": "664859", "N50 (bp)": "153275", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.3", "Number of CDSs": "6376", "Average Protein Length": "327.1", "Coding Ratio (%)": "87.2", "Number of rRNAs": "1", "Number of tRNAs": "91", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus rigui", "strain": "strain=JCM 16352", "accession": "GCA_002234615.1", "taxid": 554312, "species_taxid": 554312, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2334, "total_fragments": 2340, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus piri", "strain": "strain=MS74", "accession": "GCA_004354045.1", "taxid": 2547395, "species_taxid": 2547395, "relation_to_type": "type", "validated": true, "ani": 78.5012, "matched_fragments": 484, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus doosanensis", "strain": "strain=CAU 1055", "accession": "GCA_025060755.1", "taxid": 1229154, "species_taxid": 1229154, "relation_to_type": "type", "validated": true, "ani": 78.468, "matched_fragments": 595, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus periandrae", "strain": "strain=PM10", "accession": "GCA_022458865.1", "taxid": 1761741, "species_taxid": 1761741, "relation_to_type": "type", "validated": true, "ani": 78.2012, "matched_fragments": 362, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus foliorum", "strain": "strain=LMG 31456", "accession": "GCA_013141765.1", "taxid": 2654974, "species_taxid": 2654974, "relation_to_type": "type", "validated": true, "ani": 78.0056, "matched_fragments": 374, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus xerothermodurans", "strain": "strain=ATCC 27380", "accession": "GCA_002220865.2", "taxid": 1977292, "species_taxid": 1977292, "relation_to_type": "type", "validated": true, "ani": 77.7704, "matched_fragments": 208, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus marchantiophytorum", "strain": "strain=CGMCC 1.15043", "accession": "GCA_014640555.1", "taxid": 1619310, "species_taxid": 1619310, "relation_to_type": "type", "validated": true, "ani": 77.6087, "matched_fragments": 159, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"strain=SJY2", "accession": "GCA_009846885.1", "taxid": 2692622, "species_taxid": 2692622, "relation_to_type": "type", "validated": true, "ani": 77.1815, "matched_fragments": 240, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus albidus", "strain": "strain=CGMCC 1.16134", "accession": "GCA_014644435.1", "taxid": 2041023, "species_taxid": 2041023, "relation_to_type": "type", "validated": true, "ani": 77.0004, "matched_fragments": 79, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus planticolens", "strain": "strain=LMG 31457", "accession": "GCA_013141725.1", "taxid": 2654976, "species_taxid": 2654976, "relation_to_type": "type", "validated": true, "ani": 76.9346, "matched_fragments": 189, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus silvestris", "strain": "strain=5J-6", "accession": "GCA_009882985.1", 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1652958, "relation_to_type": "type", "validated": true, "ani": 76.5889, "matched_fragments": 106, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus taihuensis", "strain": "strain=CGMCC 1.10966", "accession": "GCA_003386535.1", "taxid": 1156355, "species_taxid": 1156355, "relation_to_type": "type", "validated": true, "ani": 76.5035, "matched_fragments": 124, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus riograndensis", "strain": "strain=SBR5", "accession": "GCA_000224945.2", "taxid": 483937, "species_taxid": 483937, "relation_to_type": "type", "validated": true, "ani": 76.3136, "matched_fragments": 94, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus gorillae", "strain": "", "accession": "GCA_000513275.1", "taxid": 1243662, "species_taxid": 1243662, "relation_to_type": "type", "validated": true, "ani": 76.2472, "matched_fragments": 114, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus mesophilus", "strain": "strain=SYSU K30004", "accession": "GCA_005938385.1", "taxid": 2582849, "species_taxid": 2582849, "relation_to_type": "type", "validated": true, "ani": 76.2194, "matched_fragments": 137, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus flagellatus", "strain": "strain=DXL2", "accession": "GCA_003217775.1", "taxid": 2211139, "species_taxid": 2211139, "relation_to_type": "type", "validated": true, "ani": 76.217, "matched_fragments": 150, "total_fragments": 2340, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus humicus", "strain": "strain=NBRC 102415", "accession": "GCA_004000905.1", "taxid": 412861, "species_taxid": 412861, "relation_to_type": "type", "validated": true, "ani": 76.1681, "matched_fragments": 88, 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