{ "type": "genome", "identifier": "GCF_002237575.1", "organism": "Spiroplasma corruscae", "title": "Spiroplasma corruscae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Academia Sinica", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002237575.1", "bioproject": "PRJNA224116", "biosample": "SAMN07267299", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "216934", "species_taxid": "216934", "organism_name": "Spiroplasma corruscae", "infraspecific_name": "strain=EC-1", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/07/31", "asm_name": "ASM223757v1", "asm_submitter": "Academia Sinica", "gbrs_paired_asm": "GCA_002237575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/237/575/GCF_002237575.1_ASM223757v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1204639", "genome_size_ungapped": "1204639", "gc_percent": "25.500000", "replicon_count": "2", "scaffold_count": "2", "contig_count": "2", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002237575.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "1072", "protein_coding_gene_count": "1033", "non_coding_gene_count": "35", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-07-31", "dateModified": "2017-07-31", "datePublished": "2017-07-31", "_annotation": { "sample_count": 1, "sample_organism": [ "Spiroplasma corruscae" ], "sample_taxid": [ "216934" ], "sample_host_organism": [ "Ellychnia corrusca" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA: Beltsville, MD" ], "sample_host_location_id": [], "data_size": "0.322 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1204639", "Number of Sequences": "2", "Longest Sequences (bp)": "1175400", "N50 (bp)": "1175400", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "25.4", "Number of CDSs": "1935", "Average Protein Length": "141.5", "Coding Ratio (%)": "68.2", "Number of rRNAs": "3", "Number of tRNAs": "29", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Spiroplasma corruscae", "strain": "strain=EC-1", "accession": "GCA_002237575.1", "taxid": 216934, "species_taxid": 216934, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 400, "total_fragments": 400, "ani_threshold": 95, "status": 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"accession": "GCA_000500935.1", "taxid": 2137, "species_taxid": 2137, "relation_to_type": "type", "validated": true, "ani": 77.7064, "matched_fragments": 56, "total_fragments": 400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma tabanidicola", "strain": "strain=TAUS-1", "accession": "GCA_009730595.1", "taxid": 324079, "species_taxid": 324079, "relation_to_type": "type", "validated": true, "ani": 77.6988, "matched_fragments": 100, "total_fragments": 400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma cantharicola", "strain": "strain=CC-1", "accession": "GCA_001281045.1", "taxid": 362837, "species_taxid": 362837, "relation_to_type": "type", "validated": true, "ani": 77.6818, "matched_fragments": 96, "total_fragments": 400, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Spiroplasma chinense", "strain": "strain=CCH", "accession": "GCA_008086545.1", "taxid": 216932, "species_taxid": 216932, 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"d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmataceae;g__Spiroplasma_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000439455.1", "gtdb_species": "s__Spiroplasma_A diminutum", "ani": 77.8151, "matched_fragments": 91, "total_fragments": 400, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Mycoplasmatales;f__Mycoplasmataceae;g__Spiroplasma_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001281045.1", "gtdb_species": "s__Spiroplasma_A cantharicola", "ani": 77.7137, "matched_fragments": 95, "total_fragments": 400, "gtdb_taxonomy": 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"spiral_cell_shape": 0.857 }, "_genome_taxon": [ "Spiroplasma", "corruscae" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }