{ "type": "genome", "identifier": "GCF_002238045.1", "organism": "Notoacmeibacter marinus", "title": "Notoacmeibacter marinus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Zhaobin Huang", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002238045.1", "bioproject": "PRJNA224116", "biosample": "SAMN06678465", "wgs_master": "NBYO00000000.1", "refseq_category": "reference genome", "taxid": "1876515", "species_taxid": "1876515", "organism_name": "Notoacmeibacter marinus", "infraspecific_name": "strain=XMTR2A4", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/01", "asm_name": "ASM223804v1", "asm_submitter": "Zhaobin Huang", "gbrs_paired_asm": "GCA_002238045.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/238/045/GCF_002238045.1_ASM223804v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3292184", "genome_size_ungapped": "3292184", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "3", "contig_count": "3", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002238045.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "3172", "protein_coding_gene_count": "3088", "non_coding_gene_count": "53", "pubmed_id": "28771124" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-01", "dateModified": "2017-08-01", "datePublished": "2017-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Notoacmeibacter marinus" ], "sample_taxid": [ "1876515" ], "sample_host_organism": [ "Nipponacmea schrenckii" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: the coast of Xiamen, Fujian Province" ], "sample_host_location_id": [], "data_size": "0.916 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3292184", "Number of Sequences": "3", "Longest Sequences (bp)": "1694787", "N50 (bp)": "1694787", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.5", "Number of CDSs": "3122", "Average Protein Length": "318.0", "Coding Ratio (%)": "90.5", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Notoacmeibacter marinus", "strain": "strain=XMTR2A4", "accession": "GCA_002238045.1", "taxid": 1876515, "species_taxid": 1876515, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1095, "total_fragments": 1095, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Notoacmeibacter ruber", "strain": "strain=M2BS9Y-3-1", "accession": "GCA_003668555.1", "taxid": 2670375, "species_taxid": 2670375, "relation_to_type": "type", "validated": true, "ani": 79.7389, "matched_fragments": 538, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor pacificus", "strain": "strain=pht-3B", "accession": "GCA_000300335.1", "taxid": 1231180, "species_taxid": 1231180, "relation_to_type": "type", "validated": true, "ani": 77.9653, "matched_fragments": 272, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Zhengella mangrovi", "strain": "strain=X9-2-2", "accession": "GCA_002727065.1", "taxid": 1982044, "species_taxid": 1982044, "relation_to_type": "type", "validated": true, "ani": 77.9213, "matched_fragments": 282, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium australicum", "strain": "strain=WSM2073", "accession": "GCA_000230995.3", "taxid": 536018, "species_taxid": 536018, "relation_to_type": "type", "validated": true, "ani": 77.8464, "matched_fragments": 242, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium metallidurans", "strain": "strain=STM 2683", "accession": "GCA_000350085.1", "taxid": 489722, "species_taxid": 489722, "relation_to_type": "type", "validated": true, "ani": 77.8418, "matched_fragments": 244, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor soli", "strain": "strain=ZZ-1", "accession": "GCA_001050155.1", "taxid": 1670619, "species_taxid": 1670619, "relation_to_type": "type", "validated": true, "ani": 77.8325, "matched_fragments": 278, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium atlanticum", "strain": "strain=CNPSo 3140", "accession": "GCA_003289965.1", "taxid": 2233532, "species_taxid": 2233532, "relation_to_type": "type", "validated": true, "ani": 77.7458, "matched_fragments": 247, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium tamadayense", "strain": "strain=DSM 28320", "accession": "GCA_003863365.1", "taxid": 425306, "species_taxid": 425306, "relation_to_type": "type", "validated": true, "ani": 77.5826, "matched_fragments": 257, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium sediminum", "strain": "strain=KCTC 42205", "accession": "GCA_013240295.1", "taxid": 1849104, "species_taxid": 1849104, "relation_to_type": "type", "validated": true, "ani": 77.5568, "matched_fragments": 241, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium sophoriradicis", "strain": "strain=CCBAU 03470", "accession": "GCA_003939025.1", "taxid": 1535245, "species_taxid": 1535245, "relation_to_type": "type", "validated": true, "ani": 77.4467, "matched_fragments": 204, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquibium microcysteis", "strain": "strain=NIBR3", "accession": "GCA_014495845.1", "taxid": 675281, "species_taxid": 675281, "relation_to_type": "type", "validated": true, "ani": 77.4414, "matched_fragments": 273, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aurantimonas endophytica", "strain": "strain=KCTC 52296", "accession": "GCA_024105745.1", "taxid": 1522175, "species_taxid": 1522175, "relation_to_type": "type", "validated": true, "ani": 77.4412, "matched_fragments": 220, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Jiella endophytica", "strain": "strain=CBS5Q-3", "accession": "GCA_004519335.1", "taxid": 2558362, "species_taxid": 2558362, "relation_to_type": "type", "validated": true, "ani": 77.4258, "matched_fragments": 245, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhizobium croatiense", "strain": "strain=13T", "accession": "GCA_019793465.1", "taxid": 2867516, "species_taxid": 2867516, "relation_to_type": "type", "validated": true, "ani": 77.4165, "matched_fragments": 207, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitratireductor indicus", "strain": "strain=C115", "accession": "GCA_000300515.1", "taxid": 721133, "species_taxid": 721133, "relation_to_type": "type", "validated": true, "ani": 77.4014, "matched_fragments": 191, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium onobrychidis", "strain": "strain=OM4", "accession": "GCA_024707545.1", "taxid": 2775404, "species_taxid": 2775404, "relation_to_type": "type", "validated": true, "ani": 77.3997, "matched_fragments": 258, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Chelativorans intermedius", "strain": "strain=LMG 28482", "accession": "GCA_025398255.1", "taxid": 515947, "species_taxid": 515947, "relation_to_type": "type", "validated": true, "ani": 77.384, "matched_fragments": 223, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquamicrobium lusatiense", "strain": "strain=DSM 11099", "accession": "GCA_014201615.1", "taxid": 89772, "species_taxid": 89772, "relation_to_type": "type", "validated": true, "ani": 77.38, "matched_fragments": 208, "total_fragments": 1095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mesorhizobium comanense", "strain": "strain=3P27G6", "accession": "GCA_005503535.1", "taxid": 2502215, "species_taxid": 2502215, "relation_to_type": "type", 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"total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Notoacmeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.91", "min_intra_species_ani": "97.88", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "conclusive" }, { "accession": "GCF_003668555.1", "gtdb_species": "s__Notoacmeibacter ruber", "ani": 79.761, "matched_fragments": 538, "total_fragments": 1095, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Notoacmeibacter", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002708825.1", "gtdb_species": "s__Zhengella sp002708825", "ani": 78.0276, "matched_fragments": 290, "total_fragments": 1095, 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