{ "type": "genome", "identifier": "GCF_002238335.1", "organism": "Campylobacter avium LMG 24591", "title": "Campylobacter avium LMG 24591", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA, ARS, WRRC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002238335.1", "bioproject": "PRJNA224116", "biosample": "SAMN03737963", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "522484", "species_taxid": "522485", "organism_name": "Campylobacter avium LMG 24591", "infraspecific_name": "strain=LMG 24591", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/01", "asm_name": "ASM223833v1", "asm_submitter": "USDA, ARS, WRRC", "gbrs_paired_asm": "GCA_002238335.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/238/335/GCF_002238335.1_ASM223833v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "1738633", "genome_size_ungapped": "1738633", "gc_percent": "34.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002238335.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "1787", "protein_coding_gene_count": "1722", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-01", "dateModified": "2017-08-01", "datePublished": "2017-08-01", "_annotation": { "sample_count": 1, "sample_organism": [ "Campylobacter avium LMG 24591" ], "sample_taxid": [ "522484" ], "sample_host_organism": [ "chicken" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Bologna" ], "sample_host_location_id": [], "data_size": "0.474 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "1738633", "Number of Sequences": "1", "Longest Sequences (bp)": "1738633", "N50 (bp)": "1738633", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "34.2", "Number of CDSs": "1748", "Average Protein Length": "308.3", "Coding Ratio (%)": "93.0", "Number of rRNAs": "4", "Number of tRNAs": "40", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Campylobacter avium", "strain": "strain=LMG 24591", "accession": "GCA_002238335.1", "taxid": 522485, "species_taxid": 522485, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 578, "total_fragments": 579, "ani_threshold": 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"matched_fragments": 101, "total_fragments": 579, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter ornithocola", "strain": "strain=WBE38", "accession": "GCA_001705345.1", "taxid": 1848766, "species_taxid": 1848766, "relation_to_type": "type", "validated": true, "ani": 76.6166, "matched_fragments": 96, "total_fragments": 579, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Campylobacter armoricus", "strain": "strain=CA656", "accession": "GCA_006176165.1", "taxid": 2505970, "species_taxid": 2505970, "relation_to_type": "type", "validated": true, "ani": 76.6101, "matched_fragments": 98, "total_fragments": 579, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002238335.1", "gtdb_species": "s__Campylobacter_D avium", "ani": 100.0, "matched_fragments": 579, "total_fragments": 579, "gtdb_taxonomy": 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