{ "type": "genome", "identifier": "GCF_002240035.1", "organism": "Legionella clemsonensis", "title": "Legionella clemsonensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Clemson University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002240035.1", "bioproject": "PRJNA224116", "biosample": "SAMN05254214", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1867846", "species_taxid": "1867846", "organism_name": "Legionella clemsonensis", "infraspecific_name": "strain=CDC-D5610", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/02", "asm_name": "ASM224003v1", "asm_submitter": "Clemson University", "gbrs_paired_asm": "GCA_002240035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/240/035/GCF_002240035.1_ASM224003v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3272100", "genome_size_ungapped": "3272100", "gc_percent": "39.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002240035.1-RS_2024_12_13", "annotation_date": "2024-12-13", "total_gene_count": "2966", "protein_coding_gene_count": "2863", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-02", "dateModified": "2017-08-02", "datePublished": "2017-08-02", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella clemsonensis" ], "sample_taxid": [ "1867846" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [ "Legionnaires' Disease" ], "sample_host_disease_id": [], "sample_host_location": [ "USA: Ohio" ], "sample_host_location_id": [], "data_size": "0.927 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3272100", "Number of Sequences": "1", "Longest Sequences (bp)": "3272100", "N50 (bp)": "3272100", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "39.4", "Number of CDSs": "2899", "Average Protein Length": "331.2", "Coding Ratio (%)": "88.0", "Number of rRNAs": "12", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella clemsonensis", "strain": "strain=CDC-D5610", "accession": "GCA_002240035.1", "taxid": 1867846, "species_taxid": 1867846, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1090, "total_fragments": 1090, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=DSM 19215", "accession": "GCA_900114725.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 83.2377, "matched_fragments": 778, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=JA-26-G1-E2", "accession": "GCA_001467745.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 83.1616, "matched_fragments": 799, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella jamestowniensis", "strain": "strain=JA-26-G1-E2", "accession": "GCA_900640205.1", "taxid": 455, "species_taxid": 455, "relation_to_type": "type", "validated": true, "ani": 83.1136, "matched_fragments": 780, "total_fragments": 1090, "ani_threshold": 95, "status": 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"organism_name": "Legionella gresilensis", "strain": "strain=Greoux 11D13", "accession": "GCA_900639865.1", "taxid": 91823, "species_taxid": 91823, "relation_to_type": "type", "validated": true, "ani": 76.9847, "matched_fragments": 107, "total_fragments": 1090, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002240035.1", "gtdb_species": "s__Tatlockia clemsonensis", "ani": 100.0, "matched_fragments": 1089, "total_fragments": 1090, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Tatlockia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_001467745.1", "gtdb_species": "s__Tatlockia jamestowniensis", "ani": 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