{ "type": "genome", "identifier": "GCF_002240415.1", "organism": "Paenibacillus kribbensis", "title": "Paenibacillus kribbensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Korea Research Institute of Bioscience and Biotechnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002240415.1", "bioproject": "PRJNA224116", "biosample": "SAMN06473270", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "172713", "species_taxid": "172713", "organism_name": "Paenibacillus kribbensis", "infraspecific_name": "strain=AM49", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/03", "asm_name": "ASM224041v1", "asm_submitter": "Korea Research Institute of Bioscience and Biotechnology", "gbrs_paired_asm": "GCA_002240415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/240/415/GCF_002240415.1_ASM224041v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5778702", "genome_size_ungapped": "5778702", "gc_percent": "47.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002240415.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "5183", "protein_coding_gene_count": "4948", "non_coding_gene_count": "126", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-03", "dateModified": "2017-08-03", "datePublished": "2017-08-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Paenibacillus kribbensis" ], "sample_taxid": [ "172713" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Daejeon" ], "sample_host_location_id": [], "data_size": "1.644 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5778702", "Number of Sequences": "1", "Longest Sequences (bp)": "5778702", "N50 (bp)": "5778702", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "46.8", "Number of CDSs": "5147", "Average Protein Length": "319.0", "Coding Ratio (%)": "85.2", "Number of rRNAs": "30", "Number of tRNAs": "92", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Paenibacillus kribbensis", "strain": "strain=AM49", "accession": "GCA_002240415.1", "taxid": 172713, "species_taxid": 172713, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1926, "total_fragments": 1926, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Paenibacillus peoriae", "strain": "strain=KCTC 3763", "accession": "GCA_000236805.2", "taxid": 59893, "species_taxid": 59893, "relation_to_type": "suspected-type", "validated": true, "ani": 94.7279, "matched_fragments": 1636, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus farraposensis", "strain": "strain=UY79", "accession": "GCA_020736845.1", "taxid": 2807095, "species_taxid": 2807095, "relation_to_type": "type", "validated": true, "ani": 88.8737, "matched_fragments": 1297, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus maysiensis", "strain": "strain=1-49", "accession": "GCA_000520815.1", "taxid": 1155954, "species_taxid": 1155954, "relation_to_type": "type", "validated": true, 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1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus ottowii", "strain": "strain=MS2379", "accession": "GCA_006874425.1", "taxid": 2315729, "species_taxid": 2315729, "relation_to_type": "type", "validated": true, "ani": 85.711, "matched_fragments": 1330, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus sonchi", "strain": "strain=LMG 24727", "accession": "GCA_016772475.1", "taxid": 373687, "species_taxid": 373687, "relation_to_type": "type", "validated": true, "ani": 78.6748, "matched_fragments": 168, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus brevis", "strain": "strain=MSJ-6", "accession": "GCA_018919145.1", "taxid": 2841508, "species_taxid": 2841508, "relation_to_type": "type", "validated": true, "ani": 77.4751, "matched_fragments": 95, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paenibacillus piscarius", "strain": "strain=P121", "accession": "GCA_022234545.1", "taxid": 1089681, "species_taxid": 1089681, "relation_to_type": "type", "validated": true, "ani": 76.7293, "matched_fragments": 124, "total_fragments": 1926, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002240415.1", "gtdb_species": "s__Paenibacillus kribbensis", "ani": 100.0, "matched_fragments": 1926, "total_fragments": 1926, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.18", "min_intra_species_ani": "95.13", "mean_intra_species_af": "0.90", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "conclusive" }, { "accession": "GCF_000236805.1", "gtdb_species": "s__Paenibacillus peoriae", "ani": 94.7265, 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"gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.14", "min_intra_species_ani": "95.58", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.84", "num_clustered_genomes": 27, "status": "-" }, { "accession": "GCF_001709075.1", "gtdb_species": "s__Paenibacillus polymyxa_D", "ani": 86.9188, "matched_fragments": 1401, "total_fragments": 1926, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Paenibacillales;f__Paenibacillaceae;g__Paenibacillus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.80", "min_intra_species_ani": "97.93", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.90", "num_clustered_genomes": 8, "status": "-" }, { "accession": "GCF_000943545.1", "gtdb_species": "s__Paenibacillus terrae_A", "ani": 86.6654, "matched_fragments": 1423, "total_fragments": 1926, "gtdb_taxonomy": 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"vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Paenibacillus", "kribbensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }