{
    "type": "genome",
    "identifier": "GCF_002243645.1",
    "organism": "Peribacillus simplex NBRC 15720 = DSM 1321",
    "title": "Peribacillus simplex NBRC 15720 = DSM 1321",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Kyungpook National University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002243645.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN05913072",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1349754",
        "species_taxid": "1478",
        "organism_name": "Peribacillus simplex NBRC 15720 = DSM 1321",
        "infraspecific_name": "strain=DSM 1321",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/08/08",
        "asm_name": "ASM224364v1",
        "asm_submitter": "Kyungpook National University",
        "gbrs_paired_asm": "GCA_002243645.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/243/645/GCF_002243645.1_ASM224364v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "5645783",
        "genome_size_ungapped": "5645783",
        "gc_percent": "40.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-05",
        "total_gene_count": "5462",
        "protein_coding_gene_count": "5194",
        "non_coding_gene_count": "120",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-08-08",
    "dateModified": "2017-08-08",
    "datePublished": "2017-08-08",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Peribacillus simplex NBRC 15720 = DSM 1321"
        ],
        "sample_taxid": [
            "1349754"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "unknown"
        ],
        "sample_host_location_id": [],
        "data_size": "1.595 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "5645783",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "5645783",
        "N50 (bp)": "5645783",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "39.9",
        "Number of CDSs": "5476",
        "Average Protein Length": "278.0",
        "Coding Ratio (%)": "80.9",
        "Number of rRNAs": "37",
        "Number of tRNAs": "77",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Peribacillus simplex",
                "strain": "strain=DSM 1321",
                "accession": "GCA_002243645.1",
                "taxid": 1478,
                "species_taxid": 1478,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1879,
                "total_fragments": 1881,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Peribacillus simplex",
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                "accession": "GCA_001591785.1",
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                "species_taxid": 1478,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 99.939,
                "matched_fragments": 1781,
                "total_fragments": 1881,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Peribacillus frigoritolerans",
                "strain": "strain=DSM 8801",
                "accession": "GCA_024169475.1",
                "taxid": 450367,
                "species_taxid": 450367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.1949,
                "matched_fragments": 1541,
                "total_fragments": 1881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peribacillus frigoritolerans",
                "strain": "strain=FJAT-2396",
                "accession": "GCA_001636405.1",
                "taxid": 450367,
                "species_taxid": 450367,
                "relation_to_type": "type",
                "validated": true,
                "ani": 93.1262,
                "matched_fragments": 1556,
                "total_fragments": 1881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peribacillus butanolivorans",
                "strain": "strain=DSM 18926",
                "accession": "GCA_001273755.1",
                "taxid": 421767,
                "species_taxid": 421767,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.5395,
                "matched_fragments": 1328,
                "total_fragments": 1881,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Peribacillus muralis",
                "strain": "strain=DSM 16288",
                "accession": "GCA_001439925.1",
                "taxid": 264697,
                "species_taxid": 264697,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.092,
                "matched_fragments": 1208,
                "total_fragments": 1881,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002243645.1",
                "gtdb_species": "s__Peribacillus simplex",
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                "matched_fragments": 1880,
                "total_fragments": 1881,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.44",
                "min_intra_species_ani": "98.94",
                "mean_intra_species_af": "0.96",
                "min_intra_species_af": "0.92",
                "num_clustered_genomes": 4,
                "status": "conclusive"
            },
            {
                "accession": "GCF_017355165.1",
                "gtdb_species": "s__Peribacillus sp017355165",
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                "total_fragments": 1881,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018613325.1",
                "gtdb_species": "s__Peribacillus sp018613325",
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                "matched_fragments": 1473,
                "total_fragments": 1881,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002835675.1",
                "gtdb_species": "s__Peribacillus sp002835675",
                "ani": 93.8718,
                "matched_fragments": 1547,
                "total_fragments": 1881,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "96.47",
                "min_intra_species_ani": "96.35",
                "mean_intra_species_af": "0.90",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_900156045.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.46",
                "min_intra_species_ani": "95.05",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_001636405.1",
                "gtdb_species": "s__Peribacillus frigoritolerans",
                "ani": 93.1191,
                "matched_fragments": 1554,
                "total_fragments": 1881,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.03",
                "min_intra_species_ani": "95.65",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 39,
                "status": "-"
            },
            {
                "accession": "GCF_001578185.1",
                "gtdb_species": "s__Peribacillus simplex_A",
                "ani": 91.0229,
                "matched_fragments": 1426,
                "total_fragments": 1881,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales_B;f__DSM-1321;g__Peribacillus",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.63",
                "min_intra_species_ani": "97.17",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.91",
                "num_clustered_genomes": 3,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Peribacillus",
        "simplex",
        "NBRC",
        "15720",
        "=",
        "DSM",
        "1321"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}