{ "type": "genome", "identifier": "GCF_002250055.1", "organism": "Sutcliffiella cohnii", "title": "Sutcliffiella cohnii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Kyungpook National University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002250055.1", "bioproject": "PRJNA224116", "biosample": "SAMN06162173", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "33932", "species_taxid": "33932", "organism_name": "Sutcliffiella cohnii", "infraspecific_name": "strain=DSM 6307", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/14", "asm_name": "ASM225005v1", "asm_submitter": "Kyungpook National University", "gbrs_paired_asm": "GCA_002250055.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/250/055/GCF_002250055.1_ASM225005v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4899141", "genome_size_ungapped": "4899141", "gc_percent": "36.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002250055.1-RS_2024_04_27", "annotation_date": "2024-04-27", "total_gene_count": "4989", "protein_coding_gene_count": "4803", "non_coding_gene_count": "136", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-14", "dateModified": "2017-08-14", "datePublished": "2017-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Sutcliffiella cohnii" ], "sample_taxid": [ "33932" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.370 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4899141", "Number of Sequences": "1", "Longest Sequences (bp)": "4899141", "N50 (bp)": "4899141", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "36.1", "Number of CDSs": "4922", "Average Protein Length": "277.3", "Coding Ratio (%)": "83.6", "Number of rRNAs": "43", "Number of tRNAs": "89", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Sutcliffiella cohnii", "strain": "strain=DSM 6307", "accession": "GCA_002250055.1", "taxid": 33932, "species_taxid": 33932, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1631, "total_fragments": 1633, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Sutcliffiella cohnii", "strain": "strain=NBRC 15565", "accession": "GCA_001591425.1", "taxid": 33932, "species_taxid": 33932, "relation_to_type": "type", "validated": true, "ani": 99.8943, "matched_fragments": 1464, "total_fragments": 1633, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Priestia megaterium", "strain": "strain=NCTC10342", "accession": "GCA_900445485.1", "taxid": 1404, "species_taxid": 1404, "relation_to_type": "type", "validated": true, "ani": 78.8363, "matched_fragments": 143, "total_fragments": 1633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Litchfieldia alkalitelluris", "strain": "strain=DSM 16976", "accession": "GCA_002019645.1", "taxid": 304268, "species_taxid": 304268, "relation_to_type": "type", "validated": true, "ani": 78.5836, "matched_fragments": 160, "total_fragments": 1633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus clarus", "strain": "strain=BHP", "accession": "GCA_000746925.1", "taxid": 2338372, "species_taxid": 2338372, "relation_to_type": "type", "validated": true, "ani": 78.5375, "matched_fragments": 129, "total_fragments": 1633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutcliffiella halmapala", "strain": "strain=DSM 8723", "accession": "GCA_002019665.1", "taxid": 79882, "species_taxid": 79882, "relation_to_type": "type", "validated": true, "ani": 78.4139, "matched_fragments": 260, "total_fragments": 1633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus alkalisoli", "strain": "strain=FJAT-45122", "accession": "GCA_002797415.1", "taxid": 2011008, "species_taxid": 2011008, "relation_to_type": "type", "validated": true, "ani": 78.3418, "matched_fragments": 317, "total_fragments": 1633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sutcliffiella deserti", "strain": "strain=DG-18", "accession": "GCA_020037475.1", "taxid": 2875501, "species_taxid": 2875501, "relation_to_type": "type", "validated": true, "ani": 77.7666, "matched_fragments": 157, "total_fragments": 1633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus marasmi", "strain": "strain=Marseille-P3556", "accession": "GCA_902168435.1", "taxid": 1926279, "species_taxid": 1926279, "relation_to_type": "type", "validated": true, "ani": 77.1581, "matched_fragments": 92, "total_fragments": 1633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus iocasae", "strain": "strain=DSM 104297", "accession": "GCA_016909075.1", "taxid": 2291674, "species_taxid": 2291674, "relation_to_type": "type", "validated": true, "ani": 77.0994, "matched_fragments": 130, "total_fragments": 1633, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Peribacillus alkalitolerans", "strain": "strain=KCTC 33631", "accession": "GCA_010882125.1", "taxid": 1550385, "species_taxid": 1550385, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gracilibacillus suaedae", "strain": "strain=LD4P30", "accession": "GCA_017599345.1", "taxid": 2820273, "species_taxid": 2820273, "relation_to_type": "type", "validated": true, "ani": 76.1868, "matched_fragments": 66, "total_fragments": 1633, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002250055.1", "gtdb_species": "s__Sutcliffiella cohnii", "ani": 100.0, "matched_fragments": 1632, "total_fragments": 1633, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_I;g__Sutcliffiella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_003944835.1", "gtdb_species": 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