{ "type": "genome", "identifier": "GCF_002251735.1", "organism": "Elstera cyanobacteriorum", "title": "Elstera cyanobacteriorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Institute of Geography and Limnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002251735.1", "bioproject": "PRJNA224116", "biosample": "SAMN07414919", "wgs_master": "NOXS00000000.1", "refseq_category": "reference genome", "taxid": "2022747", "species_taxid": "2022747", "organism_name": "Elstera cyanobacteriorum", "infraspecific_name": "strain=TH019", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/14", "asm_name": "ASM225173v1", "asm_submitter": "Nanjing Institute of Geography and Limnology", "gbrs_paired_asm": "GCA_002251735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/251/735/GCF_002251735.1_ASM225173v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3950134", "genome_size_ungapped": "3949876", "gc_percent": "62.500000", "replicon_count": "0", "scaffold_count": "35", "contig_count": "35", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002251735.1-RS_2024_03_29", "annotation_date": "2024-03-29", "total_gene_count": "3839", "protein_coding_gene_count": "3761", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-14", "dateModified": "2017-08-14", "datePublished": "2017-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Elstera cyanobacteriorum" ], "sample_taxid": [ "2022747" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Lake Taihu" ], "sample_host_location_id": [], "data_size": "1.101 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3950134", "Number of Sequences": "35", "Longest Sequences (bp)": "605801", "N50 (bp)": "367730", "Gap Ratio (%)": "0.006987", "GCcontent (%)": "62.4", "Number of CDSs": "3790", "Average Protein Length": "318.3", "Coding Ratio (%)": "91.6", "Number of rRNAs": "1", "Number of tRNAs": "51", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Elstera cyanobacteriorum", "strain": "strain=TH019", "accession": "GCA_002251735.1", "taxid": 2022747, "species_taxid": 2022747, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Azospirillum doebereinerae", "strain": "strain=GSF71", "accession": "GCA_003989665.1", "taxid": 92933, "species_taxid": 92933, "relation_to_type": "type", "validated": true, "ani": 76.0538, "matched_fragments": 217, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pararhodospirillum photometricum", "strain": "strain=DSM 122", "accession": "GCA_000284415.2", "taxid": 1084, "species_taxid": 1084, "relation_to_type": "type", "validated": true, "ani": 76.0485, "matched_fragments": 68, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nitrospirillum iridis", "strain": "strain=DSM 22198", "accession": "GCA_014205765.1", "taxid": 765888, "species_taxid": 765888, "relation_to_type": "type", "validated": true, "ani": 75.9506, "matched_fragments": 135, "total_fragments": 1299, "ani_threshold": 95, "status": "below_threshold" }, { 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