{ "type": "genome", "identifier": "GCF_002251835.1", "organism": "Flavobacterium cyanobacteriorum", "title": "Flavobacterium cyanobacteriorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nanjing Institute of Geography and Limnology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002251835.1", "bioproject": "PRJNA224116", "biosample": "SAMN07418557", "wgs_master": "NOXV00000000.1", "refseq_category": "reference genome", "taxid": "2022802", "species_taxid": "2022802", "organism_name": "Flavobacterium cyanobacteriorum", "infraspecific_name": "strain=TH021", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/14", "asm_name": "ASM225183v1", "asm_submitter": "Nanjing Institute of Geography and Limnology", "gbrs_paired_asm": "GCA_002251835.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/251/835/GCF_002251835.1_ASM225183v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3238290", "genome_size_ungapped": "3238040", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "306", "contig_count": "306", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002251835.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3093", "protein_coding_gene_count": "3000", "non_coding_gene_count": "39", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-14", "dateModified": "2017-08-14", "datePublished": "2017-08-14", "_annotation": { "sample_count": 1, "sample_organism": [ "Flavobacterium cyanobacteriorum" ], "sample_taxid": [ "2022802" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Lake Taihu" ], "sample_host_location_id": [], "data_size": "0.922 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3238290", "Number of Sequences": "306", "Longest Sequences (bp)": "114094", "N50 (bp)": "24231", "Gap Ratio (%)": "0.011179", "GCcontent (%)": "41.7", "Number of CDSs": "2960", "Average Protein Length": "315.2", "Coding Ratio (%)": "86.4", "Number of rRNAs": "3", "Number of tRNAs": "31", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Flavobacterium cyanobacteriorum", "strain": "strain=TH021", "accession": "GCA_002251835.1", "taxid": 2022802, "species_taxid": 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"total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium subsaxonicum", "strain": "strain=WB 4.1-42", "accession": "GCA_000769935.1", "taxid": 426226, "species_taxid": 426226, "relation_to_type": "type", "validated": true, "ani": 77.6106, "matched_fragments": 210, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium beibuense", "strain": "strain=F44-8", "accession": "GCA_000769915.1", "taxid": 657326, "species_taxid": 657326, "relation_to_type": "type", "validated": true, "ani": 77.5633, "matched_fragments": 166, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium salilacus subsp. altitudinum", "strain": "strain=LaA7.5", "accession": "GCA_010078225.1", "taxid": 2691899, "species_taxid": 2898423, "relation_to_type": "type", "validated": true, "ani": 77.5547, "matched_fragments": 176, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium cerinum", "strain": "strain=1E403", "accession": "GCA_004028155.1", "taxid": 2502784, "species_taxid": 2502784, "relation_to_type": "type", "validated": true, "ani": 76.9736, "matched_fragments": 183, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lindanitolerans", "strain": "strain=IP-10", "accession": "GCA_002846575.1", "taxid": 428988, "species_taxid": 428988, "relation_to_type": "type", "validated": true, "ani": 76.9112, "matched_fragments": 75, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium kingsejongi", "strain": "strain=WV39", "accession": "GCA_003076475.1", "taxid": 1678728, "species_taxid": 1678728, "relation_to_type": "type", "validated": true, "ani": 76.8258, "matched_fragments": 72, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium lindanitolerans", "strain": "strain=DSM 21886", "accession": "GCA_003663835.1", "taxid": 428988, "species_taxid": 428988, "relation_to_type": "type", "validated": true, "ani": 76.8181, "matched_fragments": 78, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Flavobacterium amniphilum", "strain": "strain=KYPY10", "accession": "GCA_023634845.1", "taxid": 1834035, "species_taxid": 1834035, "relation_to_type": "type", "validated": true, "ani": 76.361, "matched_fragments": 59, "total_fragments": 932, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002251835.1", "gtdb_species": "s__Flavobacterium cyanobacteriorum", "ani": 100.0, "matched_fragments": 923, "total_fragments": 932, "gtdb_taxonomy": 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