{
    "type": "genome",
    "identifier": "GCF_002252475.1",
    "organism": "Brucella rhizosphaerae",
    "title": "Brucella rhizosphaerae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Intercollegiate Faculty of Biotechnology UG&MUG",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002252475.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN07258022",
        "wgs_master": "NNRK00000000.1",
        "refseq_category": "reference genome",
        "taxid": "571254",
        "species_taxid": "571254",
        "organism_name": "Brucella rhizosphaerae",
        "infraspecific_name": "strain=PR17",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/08/15",
        "asm_name": "ASM225247v1",
        "asm_submitter": "Intercollegiate Faculty of Biotechnology UG&MUG",
        "gbrs_paired_asm": "GCA_002252475.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/252/475/GCF_002252475.1_ASM225247v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4904011",
        "genome_size_ungapped": "4904011",
        "gc_percent": "53.000000",
        "replicon_count": "0",
        "scaffold_count": "36",
        "contig_count": "36",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002252475.1-RS_2024_12_11",
        "annotation_date": "2024-12-11",
        "total_gene_count": "4621",
        "protein_coding_gene_count": "4509",
        "non_coding_gene_count": "55",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-08-15",
    "dateModified": "2017-08-15",
    "datePublished": "2017-08-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Brucella rhizosphaerae"
        ],
        "sample_taxid": [
            "571254"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Austria"
        ],
        "sample_host_location_id": [],
        "data_size": "1.395 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4904011",
        "Number of Sequences": "36",
        "Longest Sequences (bp)": "978742",
        "N50 (bp)": "440158",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "53.0",
        "Number of CDSs": "4590",
        "Average Protein Length": "308.3",
        "Coding Ratio (%)": "86.6",
        "Number of rRNAs": "3",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Brucella rhizosphaerae",
                "strain": "strain=PR17",
                "accession": "GCA_002252475.1",
                "taxid": 571254,
                "species_taxid": 571254,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1615,
                "total_fragments": 1616,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "[Ochrobactrum] quorumnocens",
                "strain": "strain=A44",
                "accession": "GCA_002278035.1",
                "taxid": 271865,
                "species_taxid": 271865,
                "relation_to_type": "type",
                "validated": true,
                "ani": 88.1163,
                "matched_fragments": 1295,
                "total_fragments": 1616,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brucella pituitosa",
                "strain": "strain=CCUG 50899",
                "accession": "GCA_008801705.1",
                "taxid": 571256,
                "species_taxid": 571256,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.339,
                "matched_fragments": 1255,
                "total_fragments": 1616,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brucella pituitosa",
                "strain": "strain=CCUG 50899",
                "accession": "GCA_003049685.2",
                "taxid": 571256,
                "species_taxid": 571256,
                "relation_to_type": "type",
                "validated": true,
                "ani": 87.2652,
                "matched_fragments": 1289,
                "total_fragments": 1616,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brucella grignonensis",
                "strain": "strain=OgA9a",
                "accession": "GCA_002252505.1",
                "taxid": 94627,
                "species_taxid": 94627,
                "relation_to_type": "type",
                "validated": true,
                "ani": 86.3611,
                "matched_fragments": 1139,
                "total_fragments": 1616,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brucella intermedia",
                "strain": "strain=NCTC12171",
                "accession": "GCA_900454225.1",
                "taxid": 94625,
                "species_taxid": 94625,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 80.0234,
                "matched_fragments": 742,
                "total_fragments": 1616,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brucella intermedia",
                "strain": "strain=LMG 3301",
                "accession": "GCA_000182645.1",
                "taxid": 94625,
                "species_taxid": 94625,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 79.909,
                "matched_fragments": 765,
                "total_fragments": 1616,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudochrobactrum algeriensis",
                "strain": "",
                "accession": "GCA_907164595.1",
                "taxid": 2834768,
                "species_taxid": 2834768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8694,
                "matched_fragments": 256,
                "total_fragments": 1616,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudochrobactrum algeriensis",
                "strain": "",
                "accession": "GCA_018436245.1",
                "taxid": 2834768,
                "species_taxid": 2834768,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.8151,
                "matched_fragments": 255,
                "total_fragments": 1616,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudochrobactrum asaccharolyticum",
                "strain": "strain=DSM 25619",
                "accession": "GCA_003314995.1",
                "taxid": 354351,
                "species_taxid": 354351,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7197,
                "matched_fragments": 245,
                "total_fragments": 1616,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Rhizobium skierniewicense",
                "strain": "strain=Ch11",
                "accession": "GCA_023757665.1",
                "taxid": 984260,
                "species_taxid": 984260,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.8197,
                "matched_fragments": 126,
                "total_fragments": 1616,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudaminobacter soli",
                "strain": "strain=HC19",
                "accession": "GCA_014595955.1",
                "taxid": 2831468,
                "species_taxid": 2831468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1658,
                "matched_fragments": 99,
                "total_fragments": 1616,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Pseudaminobacter soli",
                "strain": "strain=19-2017",
                "accession": "GCA_018310375.1",
                "taxid": 2831468,
                "species_taxid": 2831468,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.1658,
                "matched_fragments": 99,
                "total_fragments": 1616,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002252475.1",
                "gtdb_species": "s__Ochrobactrum_A rhizosphaerae",
                "ani": 100.0,
                "matched_fragments": 1615,
                "total_fragments": 1616,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002278035.1",
                "gtdb_species": "s__Ochrobactrum_A quorumnocens",
                "ani": 88.106,
                "matched_fragments": 1296,
                "total_fragments": 1616,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.19",
                "min_intra_species_ani": "96.78",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 5,
                "status": "-"
            },
            {
                "accession": "GCF_003049685.1",
                "gtdb_species": "s__Ochrobactrum_A pituitosa",
                "ani": 87.2786,
                "matched_fragments": 1287,
                "total_fragments": 1616,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.27",
                "min_intra_species_ani": "97.05",
                "mean_intra_species_af": "0.91",
                "min_intra_species_af": "0.82",
                "num_clustered_genomes": 14,
                "status": "-"
            },
            {
                "accession": "GCF_004368705.1",
                "gtdb_species": "s__Ochrobactrum_A sp004368705",
                "ani": 86.499,
                "matched_fragments": 1283,
                "total_fragments": 1616,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002252505.1",
                "gtdb_species": "s__Ochrobactrum_A grignonensis",
                "ani": 86.3683,
                "matched_fragments": 1139,
                "total_fragments": 1616,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.78",
                "min_intra_species_ani": "99.78",
                "mean_intra_species_af": "1.00",
                "min_intra_species_af": "1.00",
                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002252445.1",
                "gtdb_species": "s__Ochrobactrum_A thiophenivorans",
                "ani": 82.6557,
                "matched_fragments": 910,
                "total_fragments": 1616,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum_A",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_000182645.1",
                "gtdb_species": "s__Ochrobactrum intermedium",
                "ani": 79.909,
                "matched_fragments": 765,
                "total_fragments": 1616,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Ochrobactrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.99",
                "min_intra_species_ani": "97.16",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.84",
                "num_clustered_genomes": 56,
                "status": "-"
            },
            {
                "accession": "GCF_003314995.1",
                "gtdb_species": "s__Pseudochrobactrum asaccharolyticum",
                "ani": 77.7322,
                "matched_fragments": 244,
                "total_fragments": 1616,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Pseudochrobactrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.18",
                "min_intra_species_ani": "95.14",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.85",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_013327855.1",
                "gtdb_species": "s__Phyllobacterium pellucidum",
                "ani": 77.1585,
                "matched_fragments": 179,
                "total_fragments": 1616,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales_A;f__Rhizobiaceae_A;g__Phyllobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.81",
                "min_intra_species_ani": "96.22",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 6,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.247,
        "cell_length": -0.081,
        "doubling_h": 0.301,
        "growth_tmp": 37.0,
        "optimum_tmp": 37.0,
        "optimum_ph": 7.015,
        "genome_size": 3303524.072,
        "gc_content": 57.224,
        "coding_genes": 3076.459,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 54.285,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.0,
        "range_salinity": 0.0,
        "facultative_respiration": 0.111,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 0.888,
        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.714,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.285,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Brucella",
        "rhizosphaerae"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}