{ "type": "genome", "identifier": "GCF_002259755.1", "organism": "Bifidobacterium hapali", "title": "Bifidobacterium hapali", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Parma", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002259755.1", "bioproject": "PRJNA224116", "biosample": "SAMN06341148", "wgs_master": "MWWY00000000.1", "refseq_category": "reference genome", "taxid": "1630172", "species_taxid": "1630172", "organism_name": "Bifidobacterium hapali", "infraspecific_name": "strain=DSM 100202", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/18", "asm_name": "ASM225975v1", "asm_submitter": "University of Parma", "gbrs_paired_asm": "GCA_002259755.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/259/755/GCF_002259755.1_ASM225975v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2834308", "genome_size_ungapped": "2834308", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "76", "contig_count": "76", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002259755.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "2286", "protein_coding_gene_count": "2121", "non_coding_gene_count": "77", "pubmed_id": "28764658" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-18", "dateModified": "2017-08-18", "datePublished": "2017-08-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Bifidobacterium hapali" ], "sample_taxid": [ "1630172" ], "sample_host_organism": [ "common marmosets" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": 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"strain=DSM 23969", "accession": "GCA_000741165.1", "taxid": 762212, "species_taxid": 762212, "relation_to_type": "type", "validated": true, "ani": 80.84, "matched_fragments": 374, "total_fragments": 907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium biavatii", "strain": "strain=DSM 23969", "accession": "GCA_000771645.1", "taxid": 762212, "species_taxid": 762212, "relation_to_type": "type", "validated": true, "ani": 80.7797, "matched_fragments": 369, "total_fragments": 907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium amazonense", "strain": "strain=MA1", "accession": "GCA_018555435.2", "taxid": 2809027, "species_taxid": 2809027, "relation_to_type": "type", "validated": true, "ani": 80.5076, "matched_fragments": 371, "total_fragments": 907, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bifidobacterium catenulatum", "strain": "strain=JCM 1194", "accession": "GCA_001025195.1", 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