{ "type": "genome", "identifier": "GCF_002263215.1", "organism": "Actinobacillus seminis", "title": "Actinobacillus seminis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Centro de Investigaciones en Ciencias Microbiologicas, BUAP", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002263215.1", "bioproject": "PRJNA224116", "biosample": "SAMN07314126", "wgs_master": "NLFK00000000.1", "refseq_category": "na", "taxid": "722", "species_taxid": "722", "organism_name": "Actinobacillus seminis", "infraspecific_name": "strain=ATCC 15768", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/22", "asm_name": "ASM226321v1", "asm_submitter": "Centro de Investigaciones en Ciencias Microbiologicas, BUAP", "gbrs_paired_asm": "GCA_002263215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/263/215/GCF_002263215.1_ASM226321v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2365053", "genome_size_ungapped": "2365053", "gc_percent": "40.500000", "replicon_count": "0", "scaffold_count": "22", "contig_count": "22", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002263215.1-RS_2024_03_14", "annotation_date": "2024-03-14", "total_gene_count": "2321", "protein_coding_gene_count": "2096", "non_coding_gene_count": "55", "pubmed_id": "29326222" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-22", "dateModified": "2017-08-22", "datePublished": "2017-08-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinobacillus seminis" ], "sample_taxid": [ "722" ], "sample_host_organism": [ "Ovine" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Queensland" ], "sample_host_location_id": [], "data_size": "0.668 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2365053", "Number of Sequences": "22", "Longest Sequences (bp)": "455093", "N50 (bp)": "212902", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "40.7", "Number of CDSs": "2311", "Average Protein Length": "295.3", "Coding Ratio (%)": "86.6", "Number of rRNAs": "3", "Number of tRNAs": "47", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinobacillus seminis", "strain": "strain=ATCC 15768", "accession": "GCA_002263215.1", "taxid": 722, "species_taxid": 722, 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"below_threshold" }, { "organism_name": "Avibacterium gallinarum", "strain": "strain=NCTC 11188", "accession": "GCA_002921135.1", "taxid": 755, "species_taxid": 755, "relation_to_type": "type", "validated": true, "ani": 78.0628, "matched_fragments": 224, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella dagmatis", "strain": "strain=NCTC11617", "accession": "GCA_900186835.1", "taxid": 754, "species_taxid": 754, "relation_to_type": "type", "validated": true, "ani": 77.861, "matched_fragments": 184, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pasteurella dagmatis", "strain": "strain=ATCC 43325", "accession": "GCA_000163475.1", "taxid": 754, "species_taxid": 754, "relation_to_type": "type", "validated": true, "ani": 77.8412, "matched_fragments": 182, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rodentibacter haemolyticus", "strain": "strain=DSM 111151", "accession": "GCA_015356115.1", "taxid": 2778911, "species_taxid": 2778911, "relation_to_type": "type", "validated": true, "ani": 77.8223, "matched_fragments": 173, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Cricetibacter osteomyelitidis", "strain": "strain=DSM 28404", "accession": "GCA_004340985.1", "taxid": 1521931, "species_taxid": 1521931, "relation_to_type": "type", "validated": true, "ani": 77.8031, "matched_fragments": 194, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aggregatibacter aphrophilus", "strain": "strain=NCTC5906", "accession": "GCA_900636915.1", "taxid": 732, "species_taxid": 732, "relation_to_type": "type", "validated": true, "ani": 77.7644, "matched_fragments": 195, "total_fragments": 775, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vespertiliibacter pulmonis", "strain": "strain=CCUG 64585", "accession": 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