{ "type": "genome", "identifier": "GCF_002263495.1", "organism": "Nocardiopsis gilva YIM 90087", "title": "Nocardiopsis gilva YIM 90087", "description": "na", "data type": "Genome sequencing and assembly", "organization": "school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002263495.1", "bioproject": "PRJNA224116", "biosample": "SAMN07203979", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1235441", "species_taxid": "280236", "organism_name": "Nocardiopsis gilva YIM 90087", "infraspecific_name": "strain=YIM 90087", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/22", "asm_name": "ASM226349v1", "asm_submitter": "school of medicine", "gbrs_paired_asm": "GCA_002263495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/263/495/GCF_002263495.1_ASM226349v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6142152", "genome_size_ungapped": "6142152", "gc_percent": "69.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002263495.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "5549", "protein_coding_gene_count": "5345", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-22", "dateModified": "2017-08-22", "datePublished": "2017-08-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Nocardiopsis gilva YIM 90087" ], "sample_taxid": [ "1235441" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xingjiang" ], "sample_host_location_id": [], "data_size": "1.670 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6142152", "Number of Sequences": "1", "Longest Sequences (bp)": "6142152", "N50 (bp)": "6142152", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.7", "Number of CDSs": "5602", "Average Protein Length": "309.5", "Coding Ratio (%)": "84.7", "Number of rRNAs": "13", "Number of tRNAs": "67", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Nocardiopsis gilva", "strain": "strain=YIM 90087", "accession": "GCA_002263495.1", "taxid": 280236, "species_taxid": 280236, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2047, "total_fragments": 2047, 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"strain=DSM 43795", "accession": "GCA_023208015.1", "taxid": 53522, "species_taxid": 53522, "relation_to_type": "type", "validated": true, "ani": 80.2465, "matched_fragments": 712, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thermobifida halotolerans", "strain": "strain=DSM 44931", "accession": "GCA_003574835.2", "taxid": 483545, "species_taxid": 483545, "relation_to_type": "type", "validated": true, "ani": 80.1909, "matched_fragments": 747, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei subsp. dassonvillei", "strain": "strain=DSM 43111", "accession": "GCA_000092985.1", "taxid": 568208, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 80.1827, "matched_fragments": 849, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis dassonvillei", "strain": "strain=ATCC 23218", "accession": "GCA_012396345.1", "taxid": 2014, "species_taxid": 2014, "relation_to_type": "type", "validated": true, "ani": 80.0984, "matched_fragments": 809, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis sinuspersici", "strain": "strain=UTMC 00102", "accession": "GCA_001998325.1", "taxid": 501010, "species_taxid": 501010, "relation_to_type": "type", "validated": true, "ani": 80.082, "matched_fragments": 823, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis exhalans", "strain": "strain=JCM11759T", "accession": "GCA_024134545.1", "taxid": 163604, "species_taxid": 163604, "relation_to_type": "type", "validated": true, "ani": 79.9774, "matched_fragments": 800, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nocardiopsis aegyptia", "strain": "strain=DSM 44442", "accession": "GCA_013410755.1", "taxid": 220378, 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"validated": true, "ani": 79.141, "matched_fragments": 636, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinoallomurus purpureus", "strain": "strain=KCTC 19541", "accession": "GCA_024055795.1", "taxid": 478114, "species_taxid": 478114, "relation_to_type": "type", "validated": true, "ani": 77.4298, "matched_fragments": 515, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Corynebacterium pacaense", "strain": "strain=Marseille-P2417", "accession": "GCA_900169525.1", "taxid": 1816684, "species_taxid": 1816684, "relation_to_type": "type", "validated": true, "ani": 77.0967, "matched_fragments": 88, "total_fragments": 2047, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002263495.1", "gtdb_species": "s__Nocardiopsis_C gilva", "ani": 100.0, 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