{ "type": "genome", "identifier": "GCF_002263515.1", "organism": "Actinopolyspora erythraea", "title": "Actinopolyspora erythraea", "description": "na", "data type": "Genome sequencing and assembly", "organization": "school of medicine", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002263515.1", "bioproject": "PRJNA224116", "biosample": "SAMN07192573", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "414996", "species_taxid": "414996", "organism_name": "Actinopolyspora erythraea", "infraspecific_name": "strain=YIM 90600", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/08/22", "asm_name": "ASM226351v1", "asm_submitter": "school of medicine", "gbrs_paired_asm": "GCA_002263515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/263/515/GCF_002263515.1_ASM226351v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5243930", "genome_size_ungapped": "5243930", "gc_percent": "69.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002263515.1-RS_2024_12_16", "annotation_date": "2024-12-16", "total_gene_count": "4703", "protein_coding_gene_count": "4536", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-08-22", "dateModified": "2017-08-22", "datePublished": "2017-08-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Actinopolyspora erythraea" ], "sample_taxid": [ "414996" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xingjiang" ], "sample_host_location_id": [], "data_size": "1.425 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5243930", "Number of Sequences": "1", "Longest Sequences (bp)": "5243930", "N50 (bp)": "5243930", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.8", "Number of CDSs": "4747", "Average Protein Length": "305.6", "Coding Ratio (%)": "83.0", "Number of rRNAs": "10", "Number of tRNAs": "67", "Number of CRISPRs": "12" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Actinopolyspora erythraea", "strain": "strain=YIM 90600", "accession": "GCA_002263515.1", "taxid": 414996, "species_taxid": 414996, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1745, "total_fragments": 1747, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinopolyspora erythraea", "strain": "strain=YIM 90600", "accession": "GCA_000763095.1", "taxid": 414996, "species_taxid": 414996, "relation_to_type": "type", "validated": true, "ani": 99.9715, "matched_fragments": 1732, "total_fragments": 1747, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Actinopolyspora xinjiangensis", "strain": "strain=DSM 46732", "accession": "GCA_900104475.1", "taxid": 405564, "species_taxid": 405564, "relation_to_type": "type", "validated": true, "ani": 94.4673, "matched_fragments": 1467, "total_fragments": 1747, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora righensis", "strain": "strain=DSM 45501", "accession": "GCA_900116555.1", "taxid": 995060, "species_taxid": 995060, "relation_to_type": "type", "validated": true, "ani": 87.0048, "matched_fragments": 1383, "total_fragments": 1747, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora alba", "strain": "strain=DSM 45004", "accession": "GCA_900112765.1", "taxid": 673379, "species_taxid": 673379, "relation_to_type": "type", "validated": true, "ani": 86.8302, "matched_fragments": 1406, "total_fragments": 1747, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora biskrensis", "strain": "strain=CECT 8576", "accession": "GCA_013408175.1", "taxid": 1470178, "species_taxid": 1470178, "relation_to_type": "type", "validated": true, "ani": 81.968, "matched_fragments": 1067, "total_fragments": 1747, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Actinopolyspora halophila", "strain": "strain=DSM 43834", "accession": "GCA_000371785.1", "taxid": 1850, "species_taxid": 1850, "relation_to_type": "type", "validated": true, "ani": 81.9374, "matched_fragments": 1040, "total_fragments": 1747, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora erythraea", "strain": "strain=DSM 40517", "accession": "GCA_002564065.1", "taxid": 1836, "species_taxid": 1836, "relation_to_type": "type", "validated": true, "ani": 79.5447, "matched_fragments": 745, "total_fragments": 1747, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora erythraea", "strain": "strain=NRRL 2338", "accession": "GCA_000062885.1", "taxid": 1836, "species_taxid": 1836, "relation_to_type": "type", "validated": true, "ani": 79.5009, "matched_fragments": 739, "total_fragments": 1747, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora erythraea", "strain": "strain=NRRL 2338", "accession": "GCA_000171635.1", "taxid": 1836, "species_taxid": 1836, "relation_to_type": "type", "validated": true, "ani": 79.4513, "matched_fragments": 726, "total_fragments": 1747, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Saccharopolyspora rectivirgula", "strain": "strain=DSM 43747", "accession": "GCA_000497205.1", "taxid": 28042, "species_taxid": 28042, "relation_to_type": "type", "validated": true, "ani": 78.7709, "matched_fragments": 510, "total_fragments": 1747, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis panacis", "strain": "strain=YIM PH21725", "accession": "GCA_003600245.1", "taxid": 2340917, "species_taxid": 2340917, "relation_to_type": "type", "validated": true, "ani": 77.2659, "matched_fragments": 333, "total_fragments": 1747, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002263515.1", "gtdb_species": "s__Actinopolyspora erythraea", "ani": 100.0, "matched_fragments": 1745, "total_fragments": 1747, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_900104475.1", "gtdb_species": "s__Actinopolyspora xinjiangensis", "ani": 94.4536, "matched_fragments": 1468, "total_fragments": 1747, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900116555.1", "gtdb_species": "s__Actinopolyspora righensis", "ani": 87.0079, "matched_fragments": 1383, "total_fragments": 1747, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinopolyspora", "ani_circumscription_radius": 95.8717, "mean_intra_species_ani": "98.44", "min_intra_species_ani": "98.44", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.91", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900112765.1", "gtdb_species": "s__Actinopolyspora alba", "ani": 86.8351, "matched_fragments": 1405, "total_fragments": 1747, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinopolyspora", "ani_circumscription_radius": 95.8717, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_900101095.1", "gtdb_species": "s__Actinopolyspora mzabensis", "ani": 86.4625, "matched_fragments": 1322, "total_fragments": 1747, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013408175.1", "gtdb_species": "s__Actinopolyspora biskrensis", "ani": 81.9449, "matched_fragments": 1070, "total_fragments": 1747, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Pseudonocardiaceae;g__Actinopolyspora", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.22, "cell_length": 0.161, "doubling_h": null, "growth_tmp": 28.0, "optimum_tmp": 36.75, "optimum_ph": 7.0, "genome_size": 5271416.5, "gc_content": 68.8, "coding_genes": 4395.5, "rRNA16S_genes": 5.0, "tRNA_genes": 54.0, "gram_stain": 1.0, "sporulation": 1.0, "motility": 0.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.0, "thermophilic_range_tmp": 1.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Actinopolyspora", "erythraea" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }